CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041044.1-P	Field mustard	cytosol	93.54	92.97
CDY43730	Canola	cytosol	51.08	65.35
CDY43731	Canola	cytosol	33.54	62.29
CDY43729	Canola	cytosol	72.0	60.94
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	36.0	60.31
CDY65844	Canola	extracellular	38.46	46.82
CDY37492	Canola	cytosol	29.23	43.78
AT3G13680.1	Thale cress	cytosol	50.15	41.27
CDY37477	Canola	nucleus	23.38	40.64
CDY22955	Canola	cytosol	23.69	38.89
CDX78893	Canola	cytosol	18.77	37.65
CDY69763	Canola	cytosol	29.54	37.65
CDY62603	Canola	cytosol	44.0	37.63
CDY70218	Canola	plastid	8.92	37.18
CDY45455	Canola	cytosol	12.0	36.79
CDY70219	Canola	cytosol	20.0	36.52
CDX84915	Canola	cytosol	37.54	36.31
CDX94566	Canola	cytosol	23.38	35.02
CDX99431	Canola	cytosol	21.23	34.5
CDX82277	Canola	cytosol	42.15	34.42
CDY25355	Canola	cytosol	39.08	34.23
CDY37490	Canola	mitochondrion	17.54	33.93
CDX82226	Canola	cytosol	27.38	33.84
CDY17608	Canola	cytosol	42.15	33.74
CDY67602	Canola	cytosol	37.54	33.7
CDX82230	Canola	cytosol	41.23	33.17
CDY37491	Canola	cytosol	9.85	32.99
CDY71800	Canola	cytosol	38.46	32.89
CDY33422	Canola	cytosol	42.77	32.78
CDY03068	Canola	nucleus	40.92	32.68
CDY33027	Canola	cytosol	38.15	32.46
CDX80282	Canola	cytosol	38.46	32.3
CDY67601	Canola	cytosol	37.54	31.94
CDY32394	Canola	cytosol	37.23	31.68
CDY07015	Canola	cytosol	37.23	31.43
CDY40874	Canola	mitochondrion	35.38	30.67
CDY45456	Canola	cytosol	22.15	30.64
CDY19516	Canola	cytosol	32.92	30.4
CDY17609	Canola	plastid	41.23	30.25
CDY03069	Canola	plastid	40.92	29.82
CDX93257	Canola	cytosol	35.69	29.82
CDY23772	Canola	cytosol	24.31	29.7
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	32.31	29.41
CDY32393	Canola	mitochondrion	20.31	28.21
CDY71567	Canola	cytosol	34.15	27.61
CDY69271	Canola	cytosol	30.77	27.47
CDX78894	Canola	cytosol	31.38	27.42
CDY56208	Canola	nucleus	32.92	27.02
CDY67865	Canola	cytosol	40.62	26.72
CDY57669	Canola	cytosol	31.69	26.08
CDX72756	Canola	cytosol	32.0	24.88
CDY01863	Canola	cytosol	18.15	23.69
CDY70726	Canola	cytosol	16.0	23.42
CDY68693	Canola	cytosol	31.08	21.0

Protein Annotations

EnsemblPlants:CDY43733	EnsemblPlantsGene:GSBRNA2T00077222001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY43733	ProteinID:CDY43733.1	SEG:seg	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EE0D52	UniProt:A0A078I3N8	MapMan:35.1	:	:	:

Description

BnaAnng07480DBnaAnng07480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I3N8]

Coordinates

chrLK032567:+:112516..118313

Molecular Weight (calculated)

37838.9 Da

IEP (calculated)

7.682

GRAVY (calculated)

-0.142

Length

325 amino acids

Sequence
(BLAST)

001: MKTILDLPED LVEDEIISRL PMTSLRTVRS TCRKWNTECK NRILFGKEAA AKKQFMMMDS RRICLMNLDL PKDNGDPSVE QVLDQIQISK VFQCDGLLLC
101: FLMDCSRLLV WNPYLGQTRW IEPRHSFQHG DSFALGYNNN LNHKILRFSN EVHPITSFFD CFDFTTESFG PLLPLPPFHS YHGLHFTSFS CVRQDKLAVL
201: HQHWELCRTI QISLTDKIGP NINKRDILIT CEFHIRLLEL DVVTGFWVNP YSGSFFIDEE KKIAVVFVLE TVKACRYQTA HVIGQNGYFK SVRIREAPYV
301: QNSYPHNRSY LPLLCYSYLP SLVQL

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.