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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra017242.1-P Field mustard cytosol 54.68 55.67
CDY43730 Canola cytosol 35.44 55.12
CDY43729 Canola cytosol 53.16 54.69
AT3G49510.1 Thale cress cytosol 52.41 53.35
AT1G54550.1 Thale cress cytosol 48.1 52.49
AT1G66490.1 Thale cress cytosol 46.84 51.39
Bra017247.1-P Field mustard mitochondrion 44.3 51.17
Bra041044.1-P Field mustard cytosol 42.28 51.07
AT4G17200.1 Thale cress cytosol 48.86 50.66
CDY43733 Canola cytosol 41.27 50.15
AT3G49520.1 Thale cress cytosol 48.86 49.74
CDX84915 Canola cytosol 42.28 49.7
AT3G14030.1 Thale cress cytosol 25.06 49.5
Bra041045.1-P Field mustard nucleus 46.58 48.55
AT3G20030.1 Thale cress cytosol 48.86 48.01
CDY43731 Canola cytosol 21.27 48.0
AT3G19560.1 Thale cress cytosol 43.29 47.37
CDY43734 Canola mitochondrion, nucleus, plastid, vacuole 23.04 46.91
CDY62603 Canola cytosol 45.06 46.84
Bra017228.1-P Field mustard cytosol 29.62 45.88
AT1G24800.1 Thale cress nucleus 50.13 45.73
AT1G25211.1 Thale cress nucleus 50.13 45.73
AT1G25150.1 Thale cress nucleus 50.13 45.73
AT1G25055.1 Thale cress nucleus 50.13 45.73
AT1G24881.1 Thale cress nucleus 50.13 45.73
AT3G13820.1 Thale cress nucleus 47.85 45.54
AT1G59680.2 Thale cress cytosol 36.46 45.43
CDY65844 Canola extracellular 30.13 44.57
AT3G19880.1 Thale cress cytosol 43.54 44.22
AT1G11810.1 Thale cress cytosol 42.03 44.03
AT5G60560.2 Thale cress cytosol 45.32 43.98
AT1G67450.1 Thale cress cytosol 42.78 42.46
AT3G19890.1 Thale cress cytosol 44.05 42.44
AT5G51000.1 Thale cress cytosol 40.0 41.8
AT3G13830.1 Thale cress plastid 39.49 41.38
AT4G05080.1 Thale cress cytosol 40.76 41.18
AT1G32140.1 Thale cress cytosol, peroxisome, plastid 43.8 29.27
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:820576ProteinID:AEE75396.1ArrayExpress:AT3G13680EnsemblPlantsGene:AT3G13680
RefSeq:AT3G13680TAIR:AT3G13680RefSeq:AT3G13680-TAIR-GEnsemblPlants:AT3G13680.1TAIR:AT3G13680.1Unigene:At.39370
ProteinID:BAB01916.1InterPro:F-box-assoc_dom_typ1InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
GO:GO:0031146InterPro:Gal_Oxase/kelch_b-propellerInterPro:IPR001810RefSeq:NP_187980.1PFAM:PF00646PFAM:PF07734
PO:PO:0001016PO:PO:0001017PO:PO:0007616PO:PO:0009046PO:PO:0025281PFscan:PS50181
PANTHER:PTHR44355PANTHER:PTHR44355:SF1UniProt:Q9LID1SMART:SM00256SUPFAM:SSF50965SUPFAM:SSF81383
TIGRFAMs:TIGR01640UniParc:UPI00000AB098::::
Description
F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
Coordinates
chr3:-:4477289..4478751
Molecular Weight (calculated)
45174.0 Da
IEP (calculated)
7.291
GRAVY (calculated)
-0.248
Length
395 amino acids
Sequence
(BLAST)
001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.