Factsheet for AT4G05080.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G19880.1	Thale cress	cytosol	52.43	52.7
AT3G20030.1	Thale cress	cytosol	48.85	47.51
AT5G60560.2	Thale cress	cytosol	46.29	44.47
AT3G19560.1	Thale cress	cytosol	38.62	41.83
AT1G67450.1	Thale cress	cytosol	42.46	41.71
AT1G66490.1	Thale cress	cytosol	38.11	41.39
AT3G49510.1	Thale cress	cytosol	40.92	41.24
AT3G19890.1	Thale cress	cytosol	42.97	40.98
AT3G13680.1	Thale cress	cytosol	41.18	40.76
AT3G49520.1	Thale cress	cytosol	39.13	39.43
AT1G54550.1	Thale cress	cytosol	36.06	38.95
AT1G24800.1	Thale cress	nucleus	42.2	38.11
AT1G25211.1	Thale cress	nucleus	42.2	38.11
AT1G25150.1	Thale cress	nucleus	42.2	38.11
AT1G25055.1	Thale cress	nucleus	42.2	38.11
AT1G24881.1	Thale cress	nucleus	42.2	38.11
AT5G51000.1	Thale cress	cytosol	36.57	37.83
AT4G17200.1	Thale cress	cytosol	34.78	35.7
AT3G13820.1	Thale cress	nucleus	37.85	35.66
AT1G59680.2	Thale cress	cytosol	28.9	35.65
AT1G11810.1	Thale cress	cytosol	33.25	34.48
AT3G13830.1	Thale cress	plastid	32.99	34.22
AT3G14030.1	Thale cress	cytosol	16.11	31.5
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	46.55	30.8

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:825852	ProteinID:AAD48970.1	ProteinID:AEE82475.1	ArrayExpress:AT4G05080
EnsemblPlantsGene:AT4G05080	RefSeq:AT4G05080	TAIR:AT4G05080	RefSeq:AT4G05080-TAIR-G	EnsemblPlants:AT4G05080.1	TAIR:AT4G05080.1
Unigene:At.54154	ProteinID:CAB81050.1	EMBL:DQ056644	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_567289.1	PFAM:PF00646
PFAM:PF07734	PANTHER:PTHR31790	UniProt:Q9S9T0	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00000A6B39	SEG:seg	:	:	:	:

Description

F-box/kelch-repeat protein At4g05080 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T0]

Coordinates

chr4:+:2603001..2604176

Molecular Weight (calculated)

45841.1 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.413

Length

391 amino acids

Sequence
(BLAST)

001: MTMMFDLTQD LVKEILSRVP ITSLGAVRST CKGWNALSKD RILCKAKPKQ QFHQGFMLSD YRLRSMRFNI SGTFKENGEE FVNLSVKEIG NFLNKVEISH
101: MYYCGGILLC VTTDTRLVIW NPYLGQIRWI QLKTETMYST FCLRYDNNKN HKILRFLDNK QGSYEIYDLK SYSWRAFDVI PKWDIDDDGQ SASVKGNTYF
201: RTIDETPNLL ICFDFTAERF GKLLDPPFQH GWMSLSWVRE EKLVALYQHL DTSMIEIWIT TKIEPNALSW TSFLKCYIEQ LIALDFWFDI DYNNFFIDEE
301: KKLAVVIDKV ESEDCKRSNS HINSYIIGDD GYLKKMNSLG NTARSYTAIM LSSCYVSSLV QIDDPIARRR RRERNSKRKE KKRKGTTNNK V

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.