Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32393 | Canola | mitochondrion | 39.0 | 33.33 |
| AT3G13680.1 | Thale cress | cytosol | 49.5 | 25.06 |
| AT1G66490.1 | Thale cress | cytosol | 42.0 | 23.33 |
| AT1G59680.2 | Thale cress | cytosol | 36.5 | 23.03 |
| AT3G13820.1 | Thale cress | nucleus | 46.5 | 22.41 |
| CDX82226 | Canola | cytosol | 29.0 | 22.05 |
| AT4G17200.1 | Thale cress | cytosol | 42.0 | 22.05 |
| AT1G24800.1 | Thale cress | nucleus | 47.5 | 21.94 |
| AT1G25211.1 | Thale cress | nucleus | 47.5 | 21.94 |
| AT1G25150.1 | Thale cress | nucleus | 47.5 | 21.94 |
| AT1G24881.1 | Thale cress | nucleus | 47.5 | 21.94 |
| AT1G25055.1 | Thale cress | nucleus | 47.5 | 21.94 |
| AT3G19560.1 | Thale cress | cytosol | 39.5 | 21.88 |
| AT3G49520.1 | Thale cress | cytosol | 41.5 | 21.39 |
| AT3G49510.1 | Thale cress | cytosol | 40.5 | 20.88 |
| AT5G51000.1 | Thale cress | cytosol | 37.5 | 19.84 |
| CDY32394 | Canola | cytosol | 37.5 | 19.63 |
| CDY67602 | Canola | cytosol | 35.5 | 19.61 |
| Bra001803.1-P | Field mustard | cytosol | 36.5 | 19.57 |
| AT3G19880.1 | Thale cress | cytosol | 38.0 | 19.54 |
| CDY67601 | Canola | cytosol | 37.0 | 19.37 |
| AT5G60560.2 | Thale cress | cytosol | 38.5 | 18.92 |
| AT3G20030.1 | Thale cress | cytosol | 38.0 | 18.91 |
| AT3G13830.1 | Thale cress | plastid | 35.0 | 18.57 |
| AT3G19890.1 | Thale cress | cytosol | 37.5 | 18.29 |
| Bra029507.1-P | Field mustard | cytosol | 35.5 | 17.93 |
| AT1G11810.1 | Thale cress | cytosol | 33.5 | 17.77 |
| AT1G54550.1 | Thale cress | cytosol | 31.0 | 17.13 |
| AT1G67450.1 | Thale cress | cytosol | 32.5 | 16.33 |
| CDY68693 | Canola | cytosol | 39.0 | 16.22 |
| AT4G05080.1 | Thale cress | cytosol | 31.5 | 16.11 |
| AT1G32140.1 | Thale cress | cytosol, peroxisome, plastid | 37.0 | 12.52 |
| CDX94566 | Canola | cytosol | 5.0 | 4.61 |
Protein Annotations
| ArrayExpress:AT3G14030 | EnsemblPlants:AT3G14030.1 | EnsemblPlantsGene:AT3G14030 | EntrezGene:820617 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom |
| PFAM:PF07734 | ProteinID:AEE75457.1 | RefSeq:AT3G14030 | RefSeq:AT3G14030-TAIR-G | RefSeq:NP_188019.1 | SEG:seg |
| TAIR:AT3G14030 | TAIR:AT3G14030.1 | TIGRFAMs:TIGR01640 | Unigene:At.53305 | UniParc:UPI00001633BF | UniProt:F4JEN3 |
| MapMan:35.1 | : | : | : | : | : |
Description
F-box associated ubiquitination effector family protein [Source:UniProtKB/TrEMBL;Acc:F4JEN3]
Coordinates
chr3:-:4646272..4647124
Molecular Weight (calculated)
22941.3 Da
IEP (calculated)
4.932
GRAVY (calculated)
-0.184
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MITSLSKQSF WGNTYFYAQE KATVEGEGME EVDVDTTYLP VFLLCFDFTA ERFGPRLPLP FHSHDNSHDE EIVSLFCVKE EQLAVLHQNF ARCLEIWITT
101: KIEPSAVSWS MFLKVDMRPL TGFKCHVEAG SFFVDEEKKV AMVFDLDGRK KTETCRYQTA HIIGQDGYFK SVNIREAQNL GKPDIFGYTP SIYCVPLGYT
101: KIEPSAVSWS MFLKVDMRPL TGFKCHVEAG SFFVDEEKKV AMVFDLDGRK KTETCRYQTA HIIGQDGYFK SVNIREAQNL GKPDIFGYTP SIYCVPLGYT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.