Factsheet for AT3G13820.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G13680.1	Thale cress	cytosol	45.54	47.85
AT3G14030.1	Thale cress	cytosol	22.41	46.5
AT1G66490.1	Thale cress	cytosol	37.35	43.06
CDY32393	Canola	mitochondrion	23.86	42.31
AT3G19880.1	Thale cress	cytosol	39.28	41.9
AT3G20030.1	Thale cress	cytosol	40.24	41.54
AT3G49520.1	Thale cress	cytosol	38.8	41.49
Bra001803.1-P	Field mustard	cytosol	37.11	41.29
AT4G17200.1	Thale cress	cytosol	37.83	41.21
AT3G49510.1	Thale cress	cytosol	38.31	40.98
CDY67601	Canola	cytosol	37.35	40.58
CDY32394	Canola	cytosol	36.63	39.79
AT1G54550.1	Thale cress	cytosol	34.7	39.78
AT3G19560.1	Thale cress	cytosol	34.46	39.61
CDY67602	Canola	cytosol	34.46	39.5
AT3G19890.1	Thale cress	cytosol	38.8	39.27
AT3G13830.1	Thale cress	plastid	35.42	38.99
AT1G59680.2	Thale cress	cytosol	29.64	38.8
AT5G60560.2	Thale cress	cytosol	37.59	38.33
AT1G24800.1	Thale cress	nucleus	39.76	38.11
AT1G25211.1	Thale cress	nucleus	39.76	38.11
AT1G25150.1	Thale cress	nucleus	39.76	38.11
AT1G25055.1	Thale cress	nucleus	39.76	38.11
AT1G24881.1	Thale cress	nucleus	39.76	38.11
AT1G11810.1	Thale cress	cytosol	34.46	37.93
AT4G05080.1	Thale cress	cytosol	35.66	37.85
CDX82226	Canola	cytosol	23.86	37.64
CDX94566	Canola	cytosol	19.52	37.33
AT1G67450.1	Thale cress	cytosol	35.66	37.19
Bra029507.1-P	Field mustard	cytosol	35.42	37.12
AT5G51000.1	Thale cress	cytosol	33.25	36.51
CDY68693	Canola	cytosol	35.18	30.35
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	36.63	25.72

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:820594	ProteinID:AEE75421.1	ArrayExpress:AT3G13820	EnsemblPlantsGene:AT3G13820
RefSeq:AT3G13820	TAIR:AT3G13820	RefSeq:AT3G13820-TAIR-G	EnsemblPlants:AT3G13820.1	TAIR:AT3G13820.1	ProteinID:BAB02905.1
EMBL:DQ446660	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_187998.1	PFAM:PF00646	PFAM:PF07734	PO:PO:0000084
PFscan:PS50181	PANTHER:PTHR31790	UniProt:Q9LRW6	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00000A1B14	SEG:seg	:	:	:	:

Description

F-box protein At3g13820 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW6]

Coordinates

chr3:+:4549616..4551011

Molecular Weight (calculated)

47625.8 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.473

Length

415 amino acids

Sequence
(BLAST)

001: MTTMSNLPAE VLEEILSRTP VTSLRTMRST CKKWNNLSKK KIIPEAARKQ QGLMLIKKKI CSLSFSLHEI HKDDYVVPCI NQVDIPRNIE VEKIFHCDGI
101: LLCVIEDNCS LLVWNPYLGQ TRRIEVSSDA DMNDRYALGY DNNNSSHKIL RIKKDFKNSD GLGYEIYRFA SNSWSLLDEE VMKPEWDVWS VQRSSVSLKG
201: NTYFLLQGND YDDQEDEEEE DDEEYEDDDD VLPKDNFLLC FDYTTERFGP RLLLPFNPHV EETVALSCIG EERLVMLYQS FKTYKGIEIW VTDKIDPKAV
301: SWSKFLKVDI TPLTGFPVDF YADSFVIDEE KKVAAVFDIH CSYQKAHIIG EDGYLKCVNM GRASDVGNGQ PLVFSSYVPS LVKVPVKQPK GKRKGRSSET
401: KSNKNKKGRK IKIIG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.