Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G13680.1 | Thale cress | cytosol | 50.66 | 48.86 |
| AT3G49510.1 | Thale cress | cytosol | 48.03 | 47.16 |
| Bra002578.1-P | Field mustard | cytosol | 45.67 | 46.77 |
| CDY33027 | Canola | cytosol | 46.19 | 46.07 |
| CDY71800 | Canola | cytosol | 45.67 | 45.79 |
| AT1G66490.1 | Thale cress | cytosol | 43.04 | 45.56 |
| CDX80282 | Canola | cytosol | 46.19 | 45.48 |
| Bra033383.1-P | Field mustard | cytosol | 45.67 | 45.08 |
| CDY07015 | Canola | cytosol | 44.36 | 43.9 |
| CDX93257 | Canola | cytosol | 44.62 | 43.7 |
| Bra017069.1-P | Field mustard | cytosol | 44.09 | 43.64 |
| AT3G49520.1 | Thale cress | cytosol | 43.04 | 42.27 |
| AT3G20030.1 | Thale cress | cytosol | 44.36 | 42.04 |
| AT3G14030.1 | Thale cress | cytosol | 22.05 | 42.0 |
| AT1G54550.1 | Thale cress | cytosol | 39.9 | 41.99 |
| AT3G19880.1 | Thale cress | cytosol | 42.78 | 41.9 |
| AT1G25211.1 | Thale cress | nucleus | 47.24 | 41.57 |
| AT1G25150.1 | Thale cress | nucleus | 47.24 | 41.57 |
| AT1G25055.1 | Thale cress | nucleus | 47.24 | 41.57 |
| AT1G24881.1 | Thale cress | nucleus | 47.24 | 41.57 |
| AT1G24800.1 | Thale cress | nucleus | 47.24 | 41.57 |
| AT3G19560.1 | Thale cress | cytosol | 38.06 | 40.17 |
| AT5G60560.2 | Thale cress | cytosol | 41.99 | 39.31 |
| AT3G19890.1 | Thale cress | cytosol | 41.73 | 38.78 |
| AT1G59680.2 | Thale cress | cytosol | 32.02 | 38.49 |
| AT3G13820.1 | Thale cress | nucleus | 41.21 | 37.83 |
| AT5G51000.1 | Thale cress | cytosol | 37.53 | 37.83 |
| AT1G11810.1 | Thale cress | cytosol | 36.22 | 36.6 |
| AT3G13830.1 | Thale cress | plastid | 35.7 | 36.07 |
| AT1G67450.1 | Thale cress | cytosol | 37.27 | 35.68 |
| AT4G05080.1 | Thale cress | cytosol | 35.7 | 34.78 |
| AT1G32140.1 | Thale cress | cytosol, peroxisome, plastid | 42.26 | 27.24 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827431 | ProteinID:AEE83861.1 | ArrayExpress:AT4G17200 | EnsemblPlantsGene:AT4G17200 | RefSeq:AT4G17200 |
| TAIR:AT4G17200 | RefSeq:AT4G17200-TAIR-G | EnsemblPlants:AT4G17200.1 | TAIR:AT4G17200.1 | Unigene:At.54372 | ProteinID:CAB10501.1 |
| ProteinID:CAB78723.1 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | RefSeq:NP_193453.1 | PFAM:PF00646 | PFAM:PF07734 |
| PO:PO:0007611 | PO:PO:0009046 | PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | UniProt:Q9M0M7 | SMART:SM00256 |
| SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A0F70 | SEG:seg | : |
Description
Putative F-box protein At4g17200 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0M7]
Coordinates
chr4:+:9651108..9652253
Molecular Weight (calculated)
44122.7 Da
IEP (calculated)
4.686
GRAVY (calculated)
-0.202
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTMSDLSPD LVGEILTRVP MTSLISVRCT CKMWNALSKE GIFFKAARKQ FMGFTMMDSR VCSMKFDLQG IRNNEHDFVD PCIKQIAKLD QIEVSKVLQC
101: DGLLLCVGKD NSRLLVWNPY LGQTRFIKPR KRFNKLEWYA LGYDNNHNYK ILMNYDTGHL FGYEIYDFSS DSWRVLDVSP DCHIPFHQQS VSLNGNTYFL
201: AQEKIIVEGE EEEVVDEIEK FLLCFDFTTE RFGPRLPLPF HSDVLETVAI SCVRDDQLAV LYQRFETWEI WVTTKIDPTA VSWSMFLSVD MEPPTGCQFD
301: DEAGSFFIDE ENKVAVFFNS DLFNPRVENR NRRYPTAYII GQDGYFKSAT LREAPDLVKP DPYVYCCPLV WSSYAPSLVQ L
101: DGLLLCVGKD NSRLLVWNPY LGQTRFIKPR KRFNKLEWYA LGYDNNHNYK ILMNYDTGHL FGYEIYDFSS DSWRVLDVSP DCHIPFHQQS VSLNGNTYFL
201: AQEKIIVEGE EEEVVDEIEK FLLCFDFTTE RFGPRLPLPF HSDVLETVAI SCVRDDQLAV LYQRFETWEI WVTTKIDPTA VSWSMFLSVD MEPPTGCQFD
301: DEAGSFFIDE ENKVAVFFNS DLFNPRVENR NRRYPTAYII GQDGYFKSAT LREAPDLVKP DPYVYCCPLV WSSYAPSLVQ L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.