Factsheet for AT1G59680.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82226	Canola	cytosol	35.02	42.21
AT1G66490.1	Thale cress	cytosol	42.27	37.22
AT3G14030.1	Thale cress	cytosol	23.03	36.5
AT3G13680.1	Thale cress	cytosol	45.43	36.46
AT3G49510.1	Thale cress	cytosol	44.48	36.34
AT3G49520.1	Thale cress	cytosol	42.9	35.05
CDX94566	Canola	cytosol	23.97	35.02
AT1G54550.1	Thale cress	cytosol	39.75	34.81
CDY67602	Canola	cytosol	39.43	34.53
Bra001803.1-P	Field mustard	cytosol	39.75	33.78
CDY67601	Canola	cytosol	40.06	33.25
CDY32394	Canola	cytosol	39.75	32.98
AT3G19880.1	Thale cress	cytosol	39.43	32.13
AT4G17200.1	Thale cress	cytosol	38.49	32.02
AT3G20030.1	Thale cress	cytosol	40.06	31.59
CDY32393	Canola	mitochondrion	22.71	30.77
AT3G13830.1	Thale cress	plastid	35.96	30.24
Bra029507.1-P	Field mustard	cytosol	37.54	30.05
AT1G24800.1	Thale cress	nucleus	41.01	30.02
AT1G24881.1	Thale cress	nucleus	41.01	30.02
AT1G25055.1	Thale cress	nucleus	41.01	30.02
AT1G25150.1	Thale cress	nucleus	41.01	30.02
AT1G25211.1	Thale cress	nucleus	41.01	30.02
AT3G19560.1	Thale cress	cytosol	34.07	29.92
AT5G60560.2	Thale cress	cytosol	38.17	29.73
AT3G13820.1	Thale cress	nucleus	38.8	29.64
AT1G11810.1	Thale cress	cytosol	35.02	29.44
AT5G51000.1	Thale cress	cytosol	34.7	29.1
AT4G05080.1	Thale cress	cytosol	35.65	28.9
AT3G19890.1	Thale cress	cytosol	36.91	28.54
AT1G67450.1	Thale cress	cytosol	34.38	27.39
CDY68693	Canola	cytosol	31.55	20.79
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	37.85	20.3

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:842259	UniProt:A0A1P8AWI0	ProteinID:ANM61014.1	ArrayExpress:AT1G59680
EnsemblPlantsGene:AT1G59680	RefSeq:AT1G59680	TAIR:AT1G59680	RefSeq:AT1G59680-TAIR-G	EnsemblPlants:AT1G59680.2	Unigene:At.52268
Symbol:EDA1	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	RefSeq:NP_001323259.1	PFAM:PF00646	PFAM:PF07734	PANTHER:PTHR31790
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0008492AE6	:	:

Description

EDA1F-box associated ubiquitination effector family protein [Source:TAIR;Acc:AT1G59680]

Coordinates

chr1:+:21933012..21934216

Molecular Weight (calculated)

35847.9 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.261

Length

317 amino acids

Sequence
(BLAST)

001: MTTMSDLSVD LVGEILSRVP LTSLSAVRCT CKSWNTLSKH QIFGKAELAA TKQFLGFTVM DYKVCSLRFD LQGIRNDGDD FVDHGKSGLK IRNKAVKKNH
101: GNGLHRKTGR CHIVERSELN QVEVYDVFHS DGLLLCVTKD HWRLVHVHNT QKSMILTPVH GGWLRSIPSA ERFGPHLPLP VHSYDDVTLS CVRQEQLALL
201: YGNNETDDSL EIWITNQIDP NAVSWSIFLK VDIKPLIGFP KDFDPGSFFI DEEKKVVVVY DLDGHLYSTK KNCAYQRLYI IGEDGYFTSV KIKCSDSPEF
301: SAYAPSLVTY KPTNYAK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.