Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G49520.1 | Thale cress | cytosol | 70.36 | 70.36 |
| AT1G54550.1 | Thale cress | cytosol | 58.25 | 62.43 |
| AT1G66490.1 | Thale cress | cytosol | 50.52 | 54.44 |
| AT3G13680.1 | Thale cress | cytosol | 53.35 | 52.41 |
| AT4G17200.1 | Thale cress | cytosol | 47.16 | 48.03 |
| Bra018376.1-P | Field mustard | cytosol | 28.35 | 47.21 |
| CDY45456 | Canola | cytosol | 28.09 | 46.38 |
| AT1G59680.2 | Thale cress | cytosol | 36.34 | 44.48 |
| AT3G20030.1 | Thale cress | cytosol | 45.62 | 44.03 |
| AT3G19880.1 | Thale cress | cytosol | 43.81 | 43.7 |
| AT1G24800.1 | Thale cress | nucleus | 47.42 | 42.49 |
| AT1G25211.1 | Thale cress | nucleus | 47.42 | 42.49 |
| AT1G25150.1 | Thale cress | nucleus | 47.42 | 42.49 |
| AT1G25055.1 | Thale cress | nucleus | 47.42 | 42.49 |
| AT1G24881.1 | Thale cress | nucleus | 47.42 | 42.49 |
| AT3G19560.1 | Thale cress | cytosol | 39.43 | 42.38 |
| AT3G13830.1 | Thale cress | plastid | 40.72 | 41.91 |
| AT5G51000.1 | Thale cress | cytosol | 40.46 | 41.53 |
| AT5G60560.2 | Thale cress | cytosol | 43.56 | 41.52 |
| AT1G67450.1 | Thale cress | cytosol | 42.01 | 40.95 |
| AT4G05080.1 | Thale cress | cytosol | 41.24 | 40.92 |
| AT1G11810.1 | Thale cress | cytosol | 39.69 | 40.85 |
| AT3G14030.1 | Thale cress | cytosol | 20.88 | 40.5 |
| AT3G19890.1 | Thale cress | cytosol | 42.01 | 39.76 |
| AT3G13820.1 | Thale cress | nucleus | 40.98 | 38.31 |
| AT1G32140.1 | Thale cress | cytosol, peroxisome, plastid | 44.59 | 29.27 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:824113 | ProteinID:AAG52186.1 | ProteinID:AEE78551.2 | EMBL:AK227840 |
| ArrayExpress:AT3G49510 | EnsemblPlantsGene:AT3G49510 | RefSeq:AT3G49510 | TAIR:AT3G49510 | RefSeq:AT3G49510-TAIR-G | EnsemblPlants:AT3G49510.1 |
| TAIR:AT3G49510.1 | EMBL:BT010151 | ProteinID:CAB62455.1 | InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | InterPro:Gal_Oxase/kelch_b-propeller | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | RefSeq:NP_190520.2 | PFAM:PF00646 | PFAM:PF07734 | PFscan:PS50181 | PANTHER:PTHR31790 |
| UniProt:Q9CA02 | SMART:SM00256 | SUPFAM:SSF50965 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI00000A1E79 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein At3g49510 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA02]
Coordinates
chr3:+:18353891..18355057
Molecular Weight (calculated)
44768.2 Da
IEP (calculated)
5.161
GRAVY (calculated)
-0.244
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTISDLSDD LVGDILSRVP FTSLISVRST CKKWNALSKN QIFGRKTAAR NQFLEFMILD SRVCSLRLDL QGIRNEDKED FVDPSMKLIS IPSNDDQVEI
101: SQVYHCDGLL LCIAKENSNV FVWNPYLGQT KWIRPRNTFH RYDRFALGYD NNRNHKILRF LYDEESNESS RRTHIDVYDF SSDSWRVLDV NPDCDIPFYQ
201: TGVSLKGNTY FFGQEVTQAT KVTEIETCLL CFDFTTERFG PCLPLLFYPP CPSFETVTLS WVRDEKLAVL YNHYVTAEII EIRISTKIEP NAVSWSSFLT
301: VDMSLVNGLP DHFSMYFEAK SFFIDEEKKV VVLFDSKEIK TCRYQMAYIV GDDGYFKSVN IGVSPNSQRK PGRLVCSSYV PSLVQLQD
101: SQVYHCDGLL LCIAKENSNV FVWNPYLGQT KWIRPRNTFH RYDRFALGYD NNRNHKILRF LYDEESNESS RRTHIDVYDF SSDSWRVLDV NPDCDIPFYQ
201: TGVSLKGNTY FFGQEVTQAT KVTEIETCLL CFDFTTERFG PCLPLLFYPP CPSFETVTLS WVRDEKLAVL YNHYVTAEII EIRISTKIEP NAVSWSSFLT
301: VDMSLVNGLP DHFSMYFEAK SFFIDEEKKV VVLFDSKEIK TCRYQMAYIV GDDGYFKSVN IGVSPNSQRK PGRLVCSSYV PSLVQLQD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.