Factsheet for AT1G54550.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G49510.1	Thale cress	cytosol	62.43	58.25
AT3G49520.1	Thale cress	cytosol	61.6	57.47
AT3G13680.1	Thale cress	cytosol	52.49	48.1
AT1G66490.1	Thale cress	cytosol	45.58	45.83
AT4G17200.1	Thale cress	cytosol	41.99	39.9
AT3G19560.1	Thale cress	cytosol	39.78	39.89
AT1G59680.2	Thale cress	cytosol	34.81	39.75
AT3G13830.1	Thale cress	plastid	39.5	37.93
AT1G11810.1	Thale cress	cytosol	39.23	37.67
AT1G24800.1	Thale cress	nucleus	45.03	37.64
AT1G25211.1	Thale cress	nucleus	45.03	37.64
AT1G25150.1	Thale cress	nucleus	45.03	37.64
AT1G25055.1	Thale cress	nucleus	45.03	37.64
AT1G24881.1	Thale cress	nucleus	45.03	37.64
AT3G19890.1	Thale cress	cytosol	42.27	37.32
AT3G20030.1	Thale cress	cytosol	41.16	37.06
AT3G19880.1	Thale cress	cytosol	39.78	37.02
AT5G51000.1	Thale cress	cytosol	38.4	36.77
AT1G67450.1	Thale cress	cytosol	40.33	36.68
Bra018376.1-P	Field mustard	cytosol	23.48	36.48
AT5G60560.2	Thale cress	cytosol	40.61	36.12
AT4G05080.1	Thale cress	cytosol	38.95	36.06
CDY45456	Canola	cytosol	22.93	35.32
AT3G13820.1	Thale cress	nucleus	39.78	34.7
AT3G14030.1	Thale cress	cytosol	17.13	31.0
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	41.44	25.38

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:841897	UniProt:A0A178W4E9	ProteinID:AAD25633.1	ProteinID:AEE33117.1
ArrayExpress:AT1G54550	EnsemblPlantsGene:AT1G54550	RefSeq:AT1G54550	TAIR:AT1G54550	RefSeq:AT1G54550-TAIR-G	EnsemblPlants:AT1G54550.1
TAIR:AT1G54550.1	Unigene:At.37196	EMBL:BT011858	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	RefSeq:NP_564661.1
ProteinID:OAP13347.1	PFAM:PF00646	PFAM:PF07734	PO:PO:0007611	PO:PO:0007616	PO:PO:0009046
PFscan:PS50181	PANTHER:PTHR31790	UniProt:Q9SLH9	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI00000A8B09	SEG:seg	:	:	:

Description

F-box protein At1g54550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH9]

Coordinates

chr1:+:20369651..20370986

Molecular Weight (calculated)

41795.3 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.192

Length

362 amino acids

Sequence
(BLAST)

001: MATVTDLPDD LVREIFSRVP LTSLRAVRST CKKWNAISKY DILGKKAAAK NQFLEFMVTD SRVCSLRLDL QGIRSEEDLI DLSIKQISIP NKVDQVEISQ
101: VYHCDGLLLC IAKDNSSVMV WNPYLGQTKL IQPRKKLHRY DKFALGYDNN RNHKILRFLY EGSPRNVIID VYDFSSDSWR VLDIDIDWHE LFSHNSVSLK
201: GNTYFFGRKG PRLPMLFKPP SRRFEYLTLS CVRNEKLAVL YSHLNRFGTI EICISTKIDP SAVSWTTFLR IDMTLINGLP DNFFVHSYAT SFFFDEEKKV
301: AVLFGTNRYR GRETCQYYQR ACIVGDSGYF KAVNIELVFN SQLQSCQLVS SSYVPSLVQL QD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.