Factsheet for AT5G60560.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G20030.1	Thale cress	cytosol	61.18	61.94
CDY69763	Canola	cytosol	34.89	55.69
CDX82230	Canola	cytosol	54.05	54.46
Bra022464.1-P	Field mustard	cytosol	50.86	54.33
CDX82277	Canola	cytosol	53.07	54.27
Bra001800.1-P	Field mustard	cytosol	53.81	54.21
CDY25355	Canola	cytosol	49.39	54.18
Bra001764.1-P	Field mustard	cytosol	52.83	54.02
CDY22955	Canola	cytosol	25.8	53.03
CDY33422	Canola	cytosol	52.58	50.47
AT3G19880.1	Thale cress	cytosol	47.42	49.61
AT4G05080.1	Thale cress	cytosol	44.47	46.29
AT3G19890.1	Thale cress	cytosol	46.44	46.1
AT3G19560.1	Thale cress	cytosol	40.79	45.98
AT1G66490.1	Thale cress	cytosol	40.54	45.83
AT3G13680.1	Thale cress	cytosol	43.98	45.32
AT1G67450.1	Thale cress	cytosol	42.75	43.72
AT3G49510.1	Thale cress	cytosol	41.52	43.56
AT1G24800.1	Thale cress	nucleus	45.21	42.49
AT1G24881.1	Thale cress	nucleus	45.21	42.49
AT1G25055.1	Thale cress	nucleus	45.21	42.49
AT1G25150.1	Thale cress	nucleus	45.21	42.49
AT1G25211.1	Thale cress	nucleus	45.21	42.49
AT3G49520.1	Thale cress	cytosol	40.29	42.27
AT4G17200.1	Thale cress	cytosol	39.31	41.99
AT5G51000.1	Thale cress	cytosol	37.84	40.74
AT1G54550.1	Thale cress	cytosol	36.12	40.61
AT3G14030.1	Thale cress	cytosol	18.92	38.5
AT1G59680.2	Thale cress	cytosol	29.73	38.17
AT3G13820.1	Thale cress	nucleus	38.33	37.59
AT3G13830.1	Thale cress	plastid	33.42	36.07
AT1G11810.1	Thale cress	cytosol	32.92	35.54
AT1G32140.1	Thale cress	cytosol, peroxisome, plastid	48.16	33.16

Protein Annotations

MapMan:35.1	EntrezGene:836177	ProteinID:AED97345.1	ProteinID:ANM68290.1	ArrayExpress:AT5G60560	EnsemblPlantsGene:AT5G60560
RefSeq:AT5G60560	TAIR:AT5G60560	RefSeq:AT5G60560-TAIR-G	EnsemblPlants:AT5G60560.2	Unigene:At.55645	ProteinID:BAB08239.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	RefSeq:NP_001330054.1	RefSeq:NP_200864.1	PFAM:PF00646	PFAM:PF07734
PANTHER:PTHR31790	UniProt:Q9FKJ1	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI00000A3F81	SEG:seg	:	:	:	:

Description

Putative F-box protein At5g60560 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKJ1]

Coordinates

chr5:+:24345949..24347172

Molecular Weight (calculated)

46913.6 Da

IEP (calculated)

4.957

GRAVY (calculated)

-0.307

Length

407 amino acids

Sequence
(BLAST)

001: MTMMSDLSED LVEEILCRVS ITSLGAVRST CKGWYVLSKT RVLCKAETKH QFLGFMKKNY KLCSMRFDLH GNFNEEGGEE FMNPSIKKSG NLLDQLDICK
101: VFQCDGLLLC VTKEENTRLV VWNPYSGQIR WIKCNNSYHR YEGYAIGYNN NRKHKILRFS DMSFSTYKIY DFISNSWRVL DIAPNWHINP DQRGASLKGN
201: TYFFAREKRE DEEDEDILWQ PVEYLLCFDF TTENFGQLHP LPFEQYIDDA GALSSFGEEK LAALFQSFAS SVVEIWVTSM IEANAVSWIP FLKVDMKPHC
301: SFRFRLPFDG GSFFIDEEKK VAVVIHVDVV AESEMNRYED VAYIIGENGY VKKVCLVEAV NQGGSLNLSK RSCCNYPHVC CSSYVPSLAQ INQSVEFENE
401: REEEEAN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.