CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94566	Canola	cytosol	18.5	41.01
AT1G66490.1	Thale cress	cytosol	29.73	39.72
AT3G14030.1	Thale cress	cytosol	16.22	39.0
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	15.38	38.14
CDY67602	Canola	cytosol	28.07	37.29
CDY25355	Canola	cytosol	28.27	36.66
CDY37477	Canola	nucleus	14.14	36.36
CDY32393	Canola	mitochondrion	17.46	35.9
CDY70219	Canola	cytosol	13.1	35.39
CDY65844	Canola	extracellular	19.54	35.21
AT3G13820.1	Thale cress	nucleus	30.35	35.18
CDY67601	Canola	cytosol	27.44	34.55
CDY32394	Canola	cytosol	27.44	34.55
CDX84915	Canola	cytosol	24.12	34.52
CDY43729	Canola	cytosol	27.23	34.11
CDY45456	Canola	cytosol	16.63	34.04
CDX82226	Canola	cytosol	18.5	33.84
CDY40874	Canola	mitochondrion	26.2	33.6
CDX82230	Canola	cytosol	28.07	33.42
CDY45455	Canola	cytosol	7.28	33.02
CDY22955	Canola	cytosol	13.51	32.83
CDX82277	Canola	cytosol	27.03	32.66
CDY43730	Canola	cytosol	17.05	32.28
CDY33027	Canola	cytosol	25.36	31.94
CDX80282	Canola	cytosol	25.57	31.78
CDY37490	Canola	mitochondrion	11.02	31.55
AT1G59680.2	Thale cress	cytosol	20.79	31.55
CDX78894	Canola	cytosol	24.32	31.45
CDY19516	Canola	cytosol	22.87	31.25
CDY23772	Canola	cytosol	17.26	31.2
CDY43733	Canola	cytosol	21.0	31.08
CDY71800	Canola	cytosol	24.53	31.05
CDY69763	Canola	cytosol	16.42	30.98
CDY03068	Canola	nucleus	26.2	30.96
CDY33422	Canola	cytosol	27.23	30.9
CDX78893	Canola	cytosol	10.39	30.86
CDY70218	Canola	plastid	4.99	30.77
CDY17608	Canola	cytosol	25.78	30.54
CDY69271	Canola	cytosol	23.08	30.49
CDY37492	Canola	cytosol	13.72	30.41
CDY71567	Canola	cytosol	25.36	30.35
CDY03069	Canola	plastid	27.65	29.82
CDY07015	Canola	cytosol	23.7	29.61
CDX93257	Canola	cytosol	23.91	29.56
CDY62603	Canola	cytosol	23.28	29.47
CDY17609	Canola	plastid	27.03	29.35
CDY01863	Canola	cytosol	15.18	29.32
CDY37491	Canola	cytosol	5.82	28.87
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	21.41	28.85
CDY56208	Canola	nucleus	22.87	27.78
CDY67865	Canola	cytosol	26.82	26.11
CDX99431	Canola	cytosol	10.81	26.0
CDY57669	Canola	cytosol	21.21	25.82
CDY43731	Canola	cytosol	9.36	25.71
CDY70726	Canola	cytosol	11.85	25.68
CDX72756	Canola	cytosol	21.83	25.12

Protein Annotations

EnsemblPlants:CDY68693	EnsemblPlantsGene:GSBRNA2T00077073001	GO:A0A078JMF1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF07734	ProteinID:CDY68693
ProteinID:CDY68693.1	TIGRFAMs:TIGR01640	TMHMM:TMhelix	UniParc:UPI0004EF4C56	UniProt:A0A078JMF1	MapMan:35.1

Description

BnaUnng02950DBnaUnng02950D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JMF1]

Coordinates

chrLK037813:+:3..2920

Molecular Weight (calculated)

54877.3 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.131

Length

481 amino acids

Sequence
(BLAST)

001: QLRNELASTQ SAFTARVGGL EGFMDFIACT YFGWHIHSET HDLFSETTCP VETGDFLVAH SQVLPGYSPP VGKDDRVLRS VPIFLVGFGF SFCVRFTSLY
101: HDRKMLILYA MWSEDIKLVE LDIKLVEQSN VIDVPGLSYR NIPSVASTAI REMNVNALSK TQVFGKEAAR NQFLGFTVIN YRVCSLRLEL QGIHNYEGDM
201: VNQSTNNLVV WNPYLGQTRC IPPASSDIGL HDMFGFGYDK NNRNHRILRF FYDKDHPLFY FELFDFKTSS WRFLDIEPDF DLDFCQTGVS VKGNTYFVAQ
301: HNTAKLVNVL LCFDFTTERF CQPLPFHYTA EFENVALSCV GEEKLAVLYK HEGTMEIWIT TNIEHDAVSW SKFLKVEMIP LNGFPDDFGY NTETLTESFH
401: KPTKSHQICY SQTAHIIGQD GYLKSVRIGE SRNHVLDEPL VFSSYVPSLV QLGINQEEHT KVALIKGKER KHTGASLVVL F

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.