CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22955	Canola	cytosol	22.4	42.42
CDY37477	Canola	nucleus	20.0	40.11
CDX84915	Canola	cytosol	35.73	39.88
AT1G24881.1	Thale cress	nucleus	45.6	39.49
AT1G25055.1	Thale cress	nucleus	45.6	39.49
AT1G25150.1	Thale cress	nucleus	45.6	39.49
AT1G25211.1	Thale cress	nucleus	45.6	39.49
AT1G24800.1	Thale cress	nucleus	45.6	39.49
CDY32393	Canola	mitochondrion	24.27	38.89
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	19.47	37.63
CDY43729	Canola	cytosol	38.4	37.5
CDY25355	Canola	cytosol	37.07	37.47
CDY45456	Canola	cytosol	23.47	37.45
CDY69763	Canola	cytosol	25.07	36.86
CDY67602	Canola	cytosol	35.47	36.74
CDY17608	Canola	cytosol	39.2	36.21
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	34.4	36.13
CDX82277	Canola	cytosol	38.13	35.93
CDY32394	Canola	cytosol	36.27	35.6
CDY67601	Canola	cytosol	36.27	35.6
CDX78894	Canola	cytosol	35.2	35.48
CDX82230	Canola	cytosol	38.13	35.4
CDY43733	Canola	cytosol	30.67	35.38
CDY03068	Canola	nucleus	38.4	35.38
CDY70219	Canola	cytosol	16.53	34.83
CDY65844	Canola	extracellular	24.8	34.83
CDY17609	Canola	plastid	40.8	34.54
CDY37490	Canola	mitochondrion	15.47	34.52
CDY43730	Canola	cytosol	22.93	33.86
CDY62603	Canola	cytosol	34.13	33.68
CDX99431	Canola	cytosol	17.87	33.5
CDY23772	Canola	cytosol	23.73	33.46
CDY03069	Canola	plastid	39.73	33.41
CDY33027	Canola	cytosol	33.6	32.98
CDY71800	Canola	cytosol	33.33	32.89
CDY33422	Canola	cytosol	37.07	32.78
CDY37492	Canola	cytosol	18.93	32.72
CDY19516	Canola	cytosol	30.67	32.67
CDX80282	Canola	cytosol	33.6	32.56
CDY07015	Canola	cytosol	33.33	32.47
CDX82226	Canola	cytosol	22.67	32.32
CDY01863	Canola	cytosol	20.8	31.33
CDY45455	Canola	cytosol	8.8	31.13
CDX93257	Canola	cytosol	32.27	31.11
CDX78893	Canola	cytosol	13.33	30.86
CDY43731	Canola	cytosol	14.4	30.86
CDY70726	Canola	cytosol	18.13	30.63
CDY71567	Canola	cytosol	32.53	30.35
CDY69271	Canola	cytosol	28.8	29.67
CDX72756	Canola	cytosol	33.07	29.67
CDY56208	Canola	nucleus	30.13	28.54
CDX94566	Canola	cytosol	16.27	28.11
CDY37491	Canola	cytosol	7.2	27.84
CDY67865	Canola	cytosol	35.2	26.72
CDY68693	Canola	cytosol	33.6	26.2
CDY70218	Canola	plastid	5.33	25.64
CDY57669	Canola	cytosol	25.87	24.56

Protein Annotations

EnsemblPlants:CDY40874	EnsemblPlantsGene:GSBRNA2T00071888001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	PANTHER:PTHR31790	PFAM:PF07734	ProteinID:CDY40874	ProteinID:CDY40874.1
SEG:seg	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE3593	UniProt:A0A078HU37	MapMan:35.1

Description

BnaCnng09650DBnaCnng09650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU37]

Coordinates

chrLK032483:-:51695..52941

Molecular Weight (calculated)

43203.8 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.196

Length

375 amino acids

Sequence
(BLAST)

001: MMMKRICDLP PKLVGAKILS KVPITSLGQV RSTCKLWDRL TRDWIVGKEA AAKARQHQFL GFVTVDFKDD KSKLLAWNPY LGQTRSISPR TGDDFHALDT
101: YLFGYDMNRN HKMLRFYGLL FEMYEFSSNS WRVLDVTLPD SWEIKYGGHL IVSFKGNAYF LAGEITTDDV EKDVILCFDF TTETFGLPLV VPFLSLREEA
201: VTLSSVRDQK LALLHQKGQG IIEALEIWIT SEEGPFFNAA HAVTWSKFMN VDMRPLIGDR YVRFGEEFAS FFIIEEEKVA VVFDMEGYEF CFELIRTDHY
301: HTAFIIGDDD EGYYKTVSLG VAPNLWKPRP GHTGGYYPRG YVPQWYCPPF VCSSSYLPSL VQLNNQPRKR KEIDE

Best Arabidopsis Sequence Match ( AT1G24800.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.