CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78893	Canola	cytosol	34.83	86.42
CDX99431	Canola	cytosol	29.85	60.0
CDX78894	Canola	cytosol	50.75	54.84
CDY45455	Canola	cytosol	11.44	43.4
CDY37492	Canola	cytosol	23.38	43.32
CDY70218	Canola	plastid	8.21	42.31
CDY43730	Canola	cytosol	26.12	41.34
CDY25355	Canola	cytosol	37.31	40.43
CDY37491	Canola	cytosol	9.7	40.21
CDY67601	Canola	cytosol	38.06	40.05
CDY33027	Canola	cytosol	38.06	40.05
CDY17608	Canola	cytosol	40.05	39.66
CDY32394	Canola	cytosol	37.56	39.53
CDY67602	Canola	cytosol	35.57	39.5
CDY71800	Canola	cytosol	37.31	39.47
CDX80282	Canola	cytosol	37.81	39.28
CDY43731	Canola	cytosol	16.92	38.86
CDY37477	Canola	nucleus	17.91	38.5
CDX82277	Canola	cytosol	38.06	38.44
CDY07015	Canola	cytosol	36.82	38.44
CDY69763	Canola	cytosol	24.38	38.43
CDX82230	Canola	cytosol	38.56	38.37
CDY03068	Canola	nucleus	38.81	38.33
CDY19516	Canola	cytosol	33.08	37.78
CDX93257	Canola	cytosol	36.07	37.28
CDY33422	Canola	cytosol	39.3	37.26
CDX94566	Canola	cytosol	19.9	36.87
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	32.59	36.69
CDY70219	Canola	cytosol	16.17	36.52
CDX82226	Canola	cytosol	23.88	36.5
CDY43729	Canola	cytosol	34.83	36.46
CDY22955	Canola	cytosol	17.91	36.36
CDY17609	Canola	plastid	40.05	36.34
CDY45456	Canola	cytosol	21.14	36.17
CDY03069	Canola	plastid	39.8	35.87
CDY62603	Canola	cytosol	33.08	35.0
CDY23772	Canola	cytosol	22.64	34.21
CDY43733	Canola	cytosol	27.61	34.15
CDY32393	Canola	mitochondrion	19.65	33.76
CDY69271	Canola	cytosol	30.35	33.52
CDX84915	Canola	cytosol	27.36	32.74
CDY40874	Canola	mitochondrion	30.35	32.53
CDY37490	Canola	mitochondrion	13.43	32.14
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	15.42	31.96
CDX72756	Canola	cytosol	32.09	30.86
CDY67865	Canola	cytosol	37.56	30.57
CDY56208	Canola	nucleus	30.1	30.56
CDY01863	Canola	cytosol	17.91	28.92
CDY65844	Canola	extracellular	18.91	28.46
CDY70726	Canola	cytosol	15.42	27.93
CDY57669	Canola	cytosol	26.37	26.84
CDY68693	Canola	cytosol	30.35	25.36

Protein Annotations

EnsemblPlants:CDY71567	EnsemblPlantsGene:GSBRNA2T00017241001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY71567	ProteinID:CDY71567.1	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF1A5B	UniProt:A0A078K0Z5	MapMan:35.1	:	:	:

Description

BnaCnng73460DBnaCnng73460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K0Z5]

Coordinates

chrLK046390:+:663..2481

Molecular Weight (calculated)

46478.6 Da

IEP (calculated)

7.299

GRAVY (calculated)

-0.195

Length

402 amino acids

Sequence
(BLAST)

001: MTMCDDLPHD LIREKILTNV PITSLRAVRC TCKLWNALSK EFILGNETSR QHHEFQGFMM ISNKICPFRV DIQGIISNHN NLVDPSTKKL DLLDQVEVSR
101: VIHCDGLLLC VTNDNSKLLV WNPYLAQTRW IRPRICYGKS DMYAIGYDNN SKVRNYKILR LSTSHYYGLG IELEIYDFSS DLWSFLGVFP DYKINSYHSL
201: VNLAGSTYLL ARYLASWENC LLCFDYTSER FGQHMPPPFS SYYYYTDTVA LSTVREDKLA AHCYGFYQSF VTLEVWVTNK IEANAVSWSK FLKVDMGSMV
301: PVRDFLCNWK ADLVFVDEEN KVAVIIHESR NYSTKLQLTA YIIREDGYFR SMNIGEVNLN FSRKFEVQHV FSPYHPSLVQ INRRSYGGDG CANGHSEPLG
401: RV

Best Arabidopsis Sequence Match ( AT1G25150.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.