Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67865 | Canola | cytosol | 86.33 | 69.03 |
| CDY70218 | Canola | plastid | 12.66 | 64.1 |
| CDY37491 | Canola | cytosol | 13.42 | 54.64 |
| CDY37490 | Canola | mitochondrion | 21.52 | 50.6 |
| CDY70219 | Canola | cytosol | 21.27 | 47.19 |
| CDY45455 | Canola | cytosol | 12.66 | 47.17 |
| CDY37492 | Canola | cytosol | 25.82 | 47.0 |
| CDY37477 | Canola | nucleus | 22.03 | 46.52 |
| CDY69763 | Canola | cytosol | 28.1 | 43.53 |
| CDX82226 | Canola | cytosol | 26.08 | 39.16 |
| CDY23772 | Canola | cytosol | 24.81 | 36.84 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 17.22 | 35.05 |
| CDY43730 | Canola | cytosol | 22.53 | 35.04 |
| CDX84915 | Canola | cytosol | 27.09 | 31.85 |
| CDY43729 | Canola | cytosol | 30.89 | 31.77 |
| CDY43733 | Canola | cytosol | 26.08 | 31.69 |
| CDX78893 | Canola | cytosol | 12.91 | 31.48 |
| CDY43731 | Canola | cytosol | 13.92 | 31.43 |
| CDY67602 | Canola | cytosol | 27.59 | 30.11 |
| CDX94566 | Canola | cytosol | 16.46 | 29.95 |
| CDY25355 | Canola | cytosol | 28.1 | 29.92 |
| CDX82230 | Canola | cytosol | 30.13 | 29.46 |
| CDX82277 | Canola | cytosol | 29.37 | 29.15 |
| CDY33027 | Canola | cytosol | 28.1 | 29.06 |
| CDY33422 | Canola | cytosol | 31.14 | 29.01 |
| CDX99431 | Canola | cytosol | 14.68 | 29.0 |
| CDY62603 | Canola | cytosol | 27.85 | 28.95 |
| CDX80282 | Canola | cytosol | 28.35 | 28.94 |
| CDY70726 | Canola | cytosol | 16.2 | 28.83 |
| CDY67601 | Canola | cytosol | 27.85 | 28.8 |
| CDY32394 | Canola | cytosol | 27.85 | 28.8 |
| CDX78894 | Canola | cytosol | 26.84 | 28.49 |
| CDY71800 | Canola | cytosol | 27.34 | 28.42 |
| CDY22955 | Canola | cytosol | 14.18 | 28.28 |
| CDY32393 | Canola | mitochondrion | 16.71 | 28.21 |
| CDY03068 | Canola | nucleus | 28.61 | 27.76 |
| CDY17608 | Canola | cytosol | 28.35 | 27.59 |
| CDY07015 | Canola | cytosol | 26.33 | 27.01 |
| CDY65844 | Canola | extracellular | 17.97 | 26.59 |
| CDY19516 | Canola | cytosol | 23.54 | 26.42 |
| CDY45456 | Canola | cytosol | 15.7 | 26.38 |
| CDY71567 | Canola | cytosol | 26.84 | 26.37 |
| CDY03069 | Canola | plastid | 29.37 | 26.01 |
| CDY40874 | Canola | mitochondrion | 24.56 | 25.87 |
| CDY69271 | Canola | cytosol | 23.8 | 25.82 |
| CDX93257 | Canola | cytosol | 25.32 | 25.71 |
| CDY01863 | Canola | cytosol | 15.95 | 25.3 |
| CDY17609 | Canola | plastid | 28.35 | 25.28 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 21.01 | 23.25 |
| CDY56208 | Canola | nucleus | 22.03 | 21.97 |
| CDX72756 | Canola | cytosol | 22.53 | 21.29 |
| CDY68693 | Canola | cytosol | 25.82 | 21.21 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | UniProt:A0A078J2E5 | EnsemblPlants:CDY57669 | ProteinID:CDY57669 | ProteinID:CDY57669.1 |
| InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00022473001 | InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF07734 | PFscan:PS50181 |
| PANTHER:PTHR19248 | PANTHER:PTHR19248:SF21 | InterPro:RLI1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI0004EDB629 | : | : | : | : | : |
Description
BnaC01g44630DBnaC01g44630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2E5]
Coordinates
chrLK033594:-:1363..3114
Molecular Weight (calculated)
44943.6 Da
IEP (calculated)
5.509
GRAVY (calculated)
-0.295
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MHDYSPVSLW HNPQSWQKYL THIRGSELES YLTRVVEENL KPQHVDQIKK IVNMLDEREM LVQICAGLGL DRRAKEVFGG ELQWFAIAIG FIEKAETYML
101: DDSRLLKCGE VTTMSDLPDD LAEEILSRVP LTSLSAVRST CRKWNDLSKN QVFGKSASTG RKQFLGFMLK DYKVCSMKFD LQGIGNEGDF VDPSIKEVSI
201: LDQVEITQRW TIGRRNKTEE IISFDFTTEK FGKRLPLPFK THDVGNFVSL SCVREEQLAV LHQSSVIDHT LEIWVSSNID LGAVSWSKFL RTTSFCRVDF
301: QAGSFFIDEE KKVAVVIDLD DGGQARTETR YNQRANIIGE DEYFKSVNVG EALNHGKRNK FGFVLPVFSC PLVCPYVPSS AQLQMQYGKC IEGDD
101: DDSRLLKCGE VTTMSDLPDD LAEEILSRVP LTSLSAVRST CRKWNDLSKN QVFGKSASTG RKQFLGFMLK DYKVCSMKFD LQGIGNEGDF VDPSIKEVSI
201: LDQVEITQRW TIGRRNKTEE IISFDFTTEK FGKRLPLPFK THDVGNFVSL SCVREEQLAV LHQSSVIDHT LEIWVSSNID LGAVSWSKFL RTTSFCRVDF
301: QAGSFFIDEE KKVAVVIDLD DGGQARTETR YNQRANIIGE DEYFKSVNVG EALNHGKRNK FGFVLPVFSC PLVCPYVPSS AQLQMQYGKC IEGDD
001: MSDLSVDLVG EILSRVPLTS LSAVRCTCKS WNTLSKHQIF GKAELAATKQ FLGFTVMDYK VCSLRFDLQG IRNDGDDFVD HGKSGLKIRN KAHVHNTQKS
101: MILTPVHGGW LRSIPSAERF GPHLPLPVHS YDDVTLSCVR QEQLALLYGN NETDDSLEIW ITNQIDPNAV SWSIFLKVDI KPLIGFPKDF DPGSFFIDEE
201: KKVVVVYDLD GHLYSTKKNC AYQRLYIIGE DGYFTSVKIK CSDSPEFSAY APSLVTYKPT NYAK
101: MILTPVHGGW LRSIPSAERF GPHLPLPVHS YDDVTLSCVR QEQLALLYGN NETDDSLEIW ITNQIDPNAV SWSIFLKVDI KPLIGFPKDF DPGSFFIDEE
201: KKVVVVYDLD GHLYSTKKNC AYQRLYIIGE DGYFTSVKIK CSDSPEFSAY APSLVTYKPT NYAK
Arabidopsis Description
EDA1F-box associated ubiquitination effector family protein [Source:TAIR;Acc:AT1G59680]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.