CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017242.1-P	Field mustard	cytosol	89.32	88.4
CDY43730	Canola	cytosol	57.55	87.01
CDY43733	Canola	cytosol	60.94	72.0
CDY43731	Canola	cytosol	30.99	68.0
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	32.55	64.43
CDY65844	Canola	extracellular	42.45	61.05
AT3G13680.1	Thale cress	cytosol	54.69	53.16
CDY37477	Canola	nucleus	25.52	52.41
CDY37492	Canola	cytosol	27.86	49.31
CDX84915	Canola	cytosol	41.41	47.32
CDY62603	Canola	cytosol	46.35	46.84
CDY70218	Canola	plastid	8.85	43.59
CDY25355	Canola	cytosol	41.15	42.59
CDY67602	Canola	cytosol	40.1	42.54
CDX82277	Canola	cytosol	43.75	42.21
CDY17608	Canola	cytosol	44.01	41.63
CDY67601	Canola	cytosol	41.41	41.62
CDX78893	Canola	cytosol	17.45	41.36
CDY45456	Canola	cytosol	25.0	40.85
CDY33027	Canola	cytosol	40.62	40.84
CDY71800	Canola	cytosol	40.36	40.79
CDY03068	Canola	nucleus	43.23	40.79
CDY69763	Canola	cytosol	27.08	40.78
CDY32394	Canola	cytosol	40.36	40.58
CDX82230	Canola	cytosol	42.45	40.35
CDY22955	Canola	cytosol	20.57	39.9
CDY70219	Canola	cytosol	18.49	39.89
CDX80282	Canola	cytosol	40.1	39.79
CDY33422	Canola	cytosol	43.75	39.62
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	36.2	38.94
CDY07015	Canola	cytosol	38.54	38.44
CDX82226	Canola	cytosol	26.3	38.4
CDY40874	Canola	mitochondrion	37.5	38.4
CDY19516	Canola	cytosol	35.16	38.35
CDY17609	Canola	plastid	44.01	38.15
CDY37491	Canola	cytosol	9.64	38.14
CDY03069	Canola	plastid	44.27	38.12
CDY32393	Canola	mitochondrion	23.18	38.03
CDX93257	Canola	cytosol	38.28	37.79
CDX94566	Canola	cytosol	21.35	37.79
CDY37490	Canola	mitochondrion	16.41	37.5
CDX99431	Canola	cytosol	19.27	37.0
CDY45455	Canola	cytosol	10.16	36.79
CDX78894	Canola	cytosol	34.38	35.48
CDY01863	Canola	cytosol	22.92	35.34
CDY23772	Canola	cytosol	24.48	35.34
CDY67865	Canola	cytosol	45.05	35.02
CDY71567	Canola	cytosol	36.46	34.83
CDX72756	Canola	cytosol	37.76	34.69
CDY56208	Canola	nucleus	35.68	34.6
CDY69271	Canola	cytosol	31.77	33.52
CDY57669	Canola	cytosol	31.77	30.89
CDY70726	Canola	cytosol	16.67	28.83
CDY68693	Canola	cytosol	34.11	27.23

Protein Annotations

EnsemblPlants:CDY43729	EnsemblPlantsGene:GSBRNA2T00077218001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY43729	ProteinID:CDY43729.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF15AB	UniProt:A0A078I2A6	MapMan:35.1	:

Description

BnaAnng07440DBnaAnng07440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2A6]

Coordinates

chrLK032567:-:100316..101724

Molecular Weight (calculated)

44087.3 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.082

Length

384 amino acids

Sequence
(BLAST)

001: MKTIFDLPGE LLEDEIFSRV PMTSLRSVRS TCRKWNSLCK NRILFGKAAA AKKQFMMMDS RICLMNLDLP KDDGDPSIKQ VSLLDQIEIS KVFQCNGLLL
101: CVLKDCSRLL VWNPYLAQTR WIEPRISFQS SDRFAVGHDN NNLNHKILRI SDEIHPVTSK HVLGFELYDF SSGSWKVLDV TPHWEIWSHL RGVSLKGNAY
201: FPAQKKIIEA GTKIRRVAGF FLSFDFTTES FGPLLPLPFQ SQHGGVFTSL SCVREDQLAV LYQHWEAQET VEISVTDKIG PNVVSWTKFL NFHIRLLELD
301: VVTGFWVNPY SGSFFIDEEK KIAVVFVLET VKACRYQTAH VIGQNGYFKS VRIREAPYVQ NSYPHNRSYL PLLCYSYLPS LVQL

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.