CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17609	Canola	plastid	89.01	89.62
CDY03068	Canola	nucleus	74.66	81.82
CDY17608	Canola	cytosol	73.09	80.3
CDX78893	Canola	cytosol	17.26	47.53
CDY25355	Canola	cytosol	38.12	45.82
CDY43730	Canola	cytosol	26.01	45.67
CDY33027	Canola	cytosol	38.34	44.76
CDX99431	Canola	cytosol	19.96	44.5
CDY71800	Canola	cytosol	37.89	44.47
CDX80282	Canola	cytosol	38.56	44.44
CDY43729	Canola	cytosol	38.12	44.27
CDY43731	Canola	cytosol	17.26	44.0
CDY22955	Canola	cytosol	19.28	43.43
CDY45455	Canola	cytosol	10.31	43.4
CDY37492	Canola	cytosol	21.08	43.32
CDX82230	Canola	cytosol	39.24	43.32
CDX82277	Canola	cytosol	38.56	43.22
CDY07015	Canola	cytosol	37.22	43.12
CDX93257	Canola	cytosol	37.0	42.42
CDY69763	Canola	cytosol	24.22	42.35
CDY70218	Canola	plastid	7.4	42.31
CDY67601	Canola	cytosol	36.1	42.15
CDY37477	Canola	nucleus	17.49	41.71
CDY32394	Canola	cytosol	35.65	41.62
CDY33422	Canola	cytosol	39.46	41.51
CDY67602	Canola	cytosol	33.41	41.16
CDY43733	Canola	cytosol	29.82	40.92
CDX78894	Canola	cytosol	34.08	40.86
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	32.51	40.62
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.49	40.21
CDY71567	Canola	cytosol	35.87	39.8
CDY40874	Canola	mitochondrion	33.41	39.73
CDY62603	Canola	cytosol	33.63	39.47
CDX82226	Canola	cytosol	23.09	39.16
CDX84915	Canola	cytosol	29.37	38.99
CDY70219	Canola	cytosol	15.25	38.2
CDY23772	Canola	cytosol	22.65	37.97
CDY32393	Canola	mitochondrion	19.73	37.61
CDY37491	Canola	cytosol	8.07	37.11
CDY19516	Canola	cytosol	29.15	36.93
CDY65844	Canola	extracellular	21.75	36.33
CDY69271	Canola	cytosol	29.6	36.26
CDX72756	Canola	cytosol	33.86	36.12
CDX94566	Canola	cytosol	17.49	35.94
CDY56208	Canola	nucleus	31.84	35.86
CDY01863	Canola	cytosol	19.73	35.34
CDY67865	Canola	cytosol	39.01	35.22
CDY37490	Canola	mitochondrion	13.23	35.12
CDY45456	Canola	cytosol	17.49	33.19
CDY70726	Canola	cytosol	16.37	32.88
CDY57669	Canola	cytosol	26.01	29.37
CDY68693	Canola	cytosol	29.82	27.65

Protein Annotations

EnsemblPlants:CDY03069	EnsemblPlantsGene:GSBRNA2T00115405001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	ncoils:Coil
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	ProteinID:CDY03069	ProteinID:CDY03069.1	SUPFAM:SSF50965
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE6535	MapMan:35.1	:	:

Description

BnaC07g21580D

Coordinates

chrLK031939:+:756404..757850

Molecular Weight (calculated)

51427.1 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.342

Length

446 amino acids

Sequence
(BLAST)

001: MLHAEFVSTS SLSMGKSRSK PASKDSKFET TLKKRKNLGK EESKECLKTR ANLKKRKKHV LNVGRVTRFS DLPLDLVGDK ILSKVPITSL GAVRSTCKLW
101: NALSREWILS NAAELKRQVL GFMTMDYKIY SLRFHLHKDK YRGVYQSRKH IDILNQVEIS KVFHCHGLLL CVLKDNSRLA VWNPYLGQTR WIEPRSKFHK
201: CDMYALGYDK KLKHKILRCF YDYDFMISKK HSFMVEIYDL RSHSWKVLDV TSDLAIEYDA IGASLKGNTY FFAQEEIPPG DGSIVVSDLE DFLICFDFTN
301: ERFEQRLPLP FHSSLQEAVT LSCVGEDQIA VLYERLYTIG TLEFWVTTKI EPNEVSWSKF LKVDMTPHDG YLSHVGSFII DEEEKVAMVF DGDRDDQPSK
401: TRRYHRAMTV GDGYCGLYVG LRKCPTESRP PLVCSSSYLP SLVQIN

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.