Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001803.1-P | Field mustard | cytosol | 93.16 | 65.68 |
| CDY67601 | Canola | cytosol | 88.21 | 60.73 |
| CDY32394 | Canola | cytosol | 84.41 | 58.12 |
| CDY32393 | Canola | mitochondrion | 47.15 | 52.99 |
| CDY67602 | Canola | cytosol | 61.6 | 44.75 |
| CDY70218 | Canola | plastid | 11.79 | 39.74 |
| CDY45455 | Canola | cytosol | 15.21 | 37.74 |
| CDY69763 | Canola | cytosol | 35.74 | 36.86 |
| CDY37491 | Canola | cytosol | 12.93 | 35.05 |
| AT1G59680.2 | Thale cress | cytosol | 42.21 | 35.02 |
| AT1G66490.1 | Thale cress | cytosol | 46.39 | 33.89 |
| CDY37492 | Canola | cytosol | 26.62 | 32.26 |
| CDX78893 | Canola | cytosol | 19.39 | 31.48 |
| CDX94566 | Canola | cytosol | 25.48 | 30.88 |
| CDY37477 | Canola | nucleus | 21.67 | 30.48 |
| CDY70219 | Canola | cytosol | 20.15 | 29.78 |
| CDY37490 | Canola | mitochondrion | 18.63 | 29.17 |
| AT3G14030.1 | Thale cress | cytosol | 22.05 | 29.0 |
| CDY23772 | Canola | cytosol | 29.28 | 28.95 |
| CDX84915 | Canola | cytosol | 36.5 | 28.57 |
| CDY43730 | Canola | cytosol | 27.38 | 28.35 |
| CDY43733 | Canola | cytosol | 33.84 | 27.38 |
| CDY25355 | Canola | cytosol | 38.02 | 26.95 |
| CDY43729 | Canola | cytosol | 38.4 | 26.3 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 19.39 | 26.29 |
| CDY57669 | Canola | cytosol | 39.16 | 26.08 |
| CDY33027 | Canola | cytosol | 37.26 | 25.65 |
| CDX99431 | Canola | cytosol | 19.39 | 25.5 |
| CDX82277 | Canola | cytosol | 38.4 | 25.38 |
| CDY62603 | Canola | cytosol | 36.12 | 25.0 |
| CDY70726 | Canola | cytosol | 20.91 | 24.77 |
| CDY22955 | Canola | cytosol | 18.63 | 24.75 |
| CDY71800 | Canola | cytosol | 35.74 | 24.74 |
| CDY19516 | Canola | cytosol | 33.08 | 24.72 |
| CDX80282 | Canola | cytosol | 36.12 | 24.55 |
| CDY03068 | Canola | nucleus | 37.64 | 24.32 |
| CDY43731 | Canola | cytosol | 15.97 | 24.0 |
| CDX78894 | Canola | cytosol | 33.84 | 23.92 |
| CDY71567 | Canola | cytosol | 36.5 | 23.88 |
| AT3G13820.1 | Thale cress | nucleus | 37.64 | 23.86 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 32.32 | 23.81 |
| CDY17608 | Canola | cytosol | 36.5 | 23.65 |
| CDY33422 | Canola | cytosol | 37.64 | 23.35 |
| CDX82230 | Canola | cytosol | 35.74 | 23.27 |
| CDY03069 | Canola | plastid | 39.16 | 23.09 |
| CDY17609 | Canola | plastid | 38.78 | 23.02 |
| CDY40874 | Canola | mitochondrion | 32.32 | 22.67 |
| CDY07015 | Canola | cytosol | 33.08 | 22.6 |
| CDY67865 | Canola | cytosol | 42.21 | 22.47 |
| CDY69271 | Canola | cytosol | 30.8 | 22.25 |
| CDX93257 | Canola | cytosol | 32.7 | 22.11 |
| CDX72756 | Canola | cytosol | 34.98 | 22.01 |
| CDY01863 | Canola | cytosol | 20.15 | 21.29 |
| CDY45456 | Canola | cytosol | 18.63 | 20.85 |
| CDY65844 | Canola | extracellular | 19.39 | 19.1 |
| CDY56208 | Canola | nucleus | 28.52 | 18.94 |
| CDY68693 | Canola | cytosol | 33.84 | 18.5 |
Protein Annotations
| EnsemblPlants:CDX82226 | EnsemblPlantsGene:GSBRNA2T00137322001 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF07734 |
| PFscan:PS50181 | ProteinID:CDX82226 | ProteinID:CDX82226.1 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EE1D36 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA03g35950D
Coordinates
chrLK031828:+:90088..91209
Molecular Weight (calculated)
30163.8 Da
IEP (calculated)
7.546
GRAVY (calculated)
-0.015
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAMSDLPG ELVTEILSRV PLTSLRALRC TCKTWEVLSK THIIGKTDAE GTFLGFMVID YNLCSLKLDL QGTHDNGNLV YRPSIERVWL LEQAEIWENL
101: VPYSKSTILT QVRGEFLMSI PATAFGQHLI LPFGAGVRFI KAVVLSRVRD EQLAVLHQPE DNNVMEFWIT SKIEHNAASW TRFLRVEMTP QSFVTESFFI
201: DEEKKLALVS GFFKLFRHIY KRAYIIREQG CIESVEMRKD REPGNKLVFS SYAPSLVQLQ INR
101: VPYSKSTILT QVRGEFLMSI PATAFGQHLI LPFGAGVRFI KAVVLSRVRD EQLAVLHQPE DNNVMEFWIT SKIEHNAASW TRFLRVEMTP QSFVTESFFI
201: DEEKKLALVS GFFKLFRHIY KRAYIIREQG CIESVEMRKD REPGNKLVFS SYAPSLVQLQ INR
001: MSDLSVDLVG EILSRVPLTS LSAVRCTCKS WNTLSKHQIF GKAELAATKQ FLGFTVMDYK VCSLRFDLQG IRNDGDDFVD HGKSGLKIRN KAHVHNTQKS
101: MILTPVHGGW LRSIPSAERF GPHLPLPVHS YDDVTLSCVR QEQLALLYGN NETDDSLEIW ITNQIDPNAV SWSIFLKVDI KPLIGFPKDF DPGSFFIDEE
201: KKVVVVYDLD GHLYSTKKNC AYQRLYIIGE DGYFTSVKIK CSDSPEFSAY APSLVTYKPT NYAK
101: MILTPVHGGW LRSIPSAERF GPHLPLPVHS YDDVTLSCVR QEQLALLYGN NETDDSLEIW ITNQIDPNAV SWSIFLKVDI KPLIGFPKDF DPGSFFIDEE
201: KKVVVVYDLD GHLYSTKKNC AYQRLYIIGE DGYFTSVKIK CSDSPEFSAY APSLVTYKPT NYAK
Arabidopsis Description
EDA1F-box associated ubiquitination effector family protein [Source:TAIR;Acc:AT1G59680]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.