Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70218 | Canola | plastid | 9.66 | 43.59 |
| CDY37491 | Canola | cytosol | 11.08 | 40.21 |
| CDY25355 | Canola | cytosol | 42.33 | 40.16 |
| CDY23772 | Canola | cytosol | 29.83 | 39.47 |
| CDY37477 | Canola | nucleus | 20.74 | 39.04 |
| CDY43730 | Canola | cytosol | 28.12 | 38.98 |
| CDX78893 | Canola | cytosol | 17.9 | 38.89 |
| CDY22955 | Canola | cytosol | 21.88 | 38.89 |
| CDY43731 | Canola | cytosol | 19.03 | 38.29 |
| CDY69271 | Canola | cytosol | 38.07 | 36.81 |
| CDX82277 | Canola | cytosol | 41.19 | 36.43 |
| CDY37492 | Canola | cytosol | 22.44 | 36.41 |
| CDY71800 | Canola | cytosol | 38.92 | 36.05 |
| CDY33027 | Canola | cytosol | 38.64 | 35.6 |
| CDY67602 | Canola | cytosol | 36.36 | 35.36 |
| CDY69763 | Canola | cytosol | 25.57 | 35.29 |
| CDY43729 | Canola | cytosol | 38.35 | 35.16 |
| CDX82230 | Canola | cytosol | 40.34 | 35.15 |
| CDY45455 | Canola | cytosol | 10.51 | 34.91 |
| CDY32393 | Canola | mitochondrion | 22.73 | 34.19 |
| CDX80282 | Canola | cytosol | 37.5 | 34.11 |
| CDY45456 | Canola | cytosol | 22.73 | 34.04 |
| CDY07015 | Canola | cytosol | 37.22 | 34.03 |
| CDY33422 | Canola | cytosol | 40.62 | 33.73 |
| CDX99431 | Canola | cytosol | 19.03 | 33.5 |
| CDY32394 | Canola | cytosol | 36.08 | 33.25 |
| CDX93257 | Canola | cytosol | 36.65 | 33.16 |
| CDY71567 | Canola | cytosol | 37.78 | 33.08 |
| CDX82226 | Canola | cytosol | 24.72 | 33.08 |
| CDY43733 | Canola | cytosol | 30.4 | 32.92 |
| CDY67601 | Canola | cytosol | 35.51 | 32.72 |
| CDY03068 | Canola | nucleus | 37.5 | 32.43 |
| CDX78894 | Canola | cytosol | 34.09 | 32.26 |
| CDX84915 | Canola | cytosol | 30.11 | 31.55 |
| CDX94566 | Canola | cytosol | 19.32 | 31.34 |
| CDY62603 | Canola | cytosol | 33.81 | 31.32 |
| CDY17608 | Canola | cytosol | 36.08 | 31.28 |
| CDY70219 | Canola | cytosol | 15.62 | 30.9 |
| CDY40874 | Canola | mitochondrion | 32.67 | 30.67 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 16.76 | 30.41 |
| CDY37490 | Canola | mitochondrion | 13.92 | 29.17 |
| CDY03069 | Canola | plastid | 36.93 | 29.15 |
| CDY17609 | Canola | plastid | 36.65 | 29.12 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 28.98 | 28.57 |
| CDY65844 | Canola | extracellular | 21.02 | 27.72 |
| CDX72756 | Canola | cytosol | 31.25 | 26.32 |
| CDY56208 | Canola | nucleus | 29.55 | 26.26 |
| CDY01863 | Canola | cytosol | 18.47 | 26.1 |
| CDY67865 | Canola | cytosol | 36.08 | 25.71 |
| CDY70726 | Canola | cytosol | 16.19 | 25.68 |
| CDY57669 | Canola | cytosol | 26.42 | 23.54 |
| CDY68693 | Canola | cytosol | 31.25 | 22.87 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | UniProt:A0A078G2L5 | EnsemblPlants:CDY19516 | ProteinID:CDY19516 | ProteinID:CDY19516.1 |
| InterPro:F-box-assoc_dom_typ1 | InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00009142001 | InterPro:IPR001810 | PFAM:PF00646 | PFAM:PF07734 | PFscan:PS50181 |
| PANTHER:PTHR44355 | PANTHER:PTHR44355:SF1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 | UniParc:UPI0004EC55F2 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g13870DBnaC09g13870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2L5]
Coordinates
chrLK032097:-:201158..202633
Molecular Weight (calculated)
40688.0 Da
IEP (calculated)
9.358
GRAVY (calculated)
-0.292
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMISDLPHD LEEEILSRVP ITSLRAVRST CKHWNGLFKD GSFIKNHRGK EFLAIKSNGS QVCLMSINLH RNQPIKRIGK TKLEYTSRFI HCNGLLLFVT
101: EEGNITRLVV WNPYLGQTRR VEPRRVYGQK DVYGFGYDNN NNHKILRLVY RFEYNVTQEL YDLKSNFSYS VSAYTGISVK GSSYFLTKEK GEEVAGNAFF
201: LLGFDFTREA FGPRLELPYL SDGREEYPKV LSALREEKLV VLLRRRVYTL GMEIWITDRV EPNAVSWNKF LAVNMATITG FKYLVYARRG LFVDEEKKVV
301: VFSEMTAYGP HNKTWSCIIR EDGYLKKVDL GEECSSRGPF VCSYYAPSLV QI
101: EEGNITRLVV WNPYLGQTRR VEPRRVYGQK DVYGFGYDNN NNHKILRLVY RFEYNVTQEL YDLKSNFSYS VSAYTGISVK GSSYFLTKEK GEEVAGNAFF
201: LLGFDFTREA FGPRLELPYL SDGREEYPKV LSALREEKLV VLLRRRVYTL GMEIWITDRV EPNAVSWNKF LAVNMATITG FKYLVYARRG LFVDEEKKVV
301: VFSEMTAYGP HNKTWSCIIR EDGYLKKVDL GEECSSRGPF VCSYYAPSLV QI
001: MAIMSDLPRD LLAEILSRVP LASLRSVRFT CKKWNDLSKD RSFLKKQIVE AKKKQLKSKE FEVIMMRNFR VYLTSVDLHN DVNPSFTPKG TLTSFSDDAN
101: QHQVDNVSSV FHCDGLLLCI TKDLNFRLVV WNPYFGQTRW IQPRNSYHIK DIYAIGYDEN KNHKILRLKD QYYDYDSHPR ARICEFELYS FESNSWKVVL
201: DVSPDWYIHS YHRGLSVKGN TYWYATEKHG YVNFLICFDF TTEKFGPRLP LPFNATESFT YDDVVTLSSV GEEQLALLFQ SDATLMMEIW VTSKVDPTEV
301: LWNKLFLAVD HDMIEFDYEL KFVADAGSFF IDQKKNVVVV FDKDMNEHTH RGMAYIVGKN GYFKRVDIGE EAYTSCFPLV CSYVPSSVQI RQLT
101: QHQVDNVSSV FHCDGLLLCI TKDLNFRLVV WNPYFGQTRW IQPRNSYHIK DIYAIGYDEN KNHKILRLKD QYYDYDSHPR ARICEFELYS FESNSWKVVL
201: DVSPDWYIHS YHRGLSVKGN TYWYATEKHG YVNFLICFDF TTEKFGPRLP LPFNATESFT YDDVVTLSSV GEEQLALLFQ SDATLMMEIW VTSKVDPTEV
301: LWNKLFLAVD HDMIEFDYEL KFVADAGSFF IDQKKNVVVV FDKDMNEHTH RGMAYIVGKN GYFKRVDIGE EAYTSCFPLV CSYVPSSVQI RQLT
Arabidopsis Description
At2g17830 [Source:UniProtKB/TrEMBL;Acc:Q058M6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.