Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70218 | Canola | plastid | 23.04 | 64.1 |
| CDY37491 | Canola | cytosol | 23.96 | 53.61 |
| CDX78893 | Canola | cytosol | 30.41 | 40.74 |
| CDY45455 | Canola | cytosol | 19.35 | 39.62 |
| CDY37477 | Canola | nucleus | 34.1 | 39.57 |
| CDY43731 | Canola | cytosol | 31.8 | 39.43 |
| CDX99431 | Canola | cytosol | 34.56 | 37.5 |
| CDY69763 | Canola | cytosol | 36.41 | 30.98 |
| CDX94566 | Canola | cytosol | 30.88 | 30.88 |
| CDY43730 | Canola | cytosol | 34.56 | 29.53 |
| CDY43733 | Canola | cytosol | 43.78 | 29.23 |
| CDY22955 | Canola | cytosol | 26.27 | 28.79 |
| CDY43729 | Canola | cytosol | 49.31 | 27.86 |
| CDX82277 | Canola | cytosol | 50.69 | 27.64 |
| CDY67865 | Canola | cytosol | 62.21 | 27.33 |
| CDX87320 | Canola | cytosol, extracellular, mitochondrion, nucleus | 44.7 | 27.17 |
| CDY70219 | Canola | cytosol | 22.12 | 26.97 |
| CDY37490 | Canola | mitochondrion | 20.74 | 26.79 |
| CDX82226 | Canola | cytosol | 32.26 | 26.62 |
| CDY57669 | Canola | cytosol | 47.0 | 25.82 |
| CDY25355 | Canola | cytosol | 43.78 | 25.61 |
| CDX82230 | Canola | cytosol | 47.47 | 25.5 |
| CDY33422 | Canola | cytosol | 49.77 | 25.47 |
| CDY62603 | Canola | cytosol | 44.24 | 25.26 |
| CDY67602 | Canola | cytosol | 41.94 | 25.14 |
| CDY67601 | Canola | cytosol | 43.32 | 24.61 |
| CDY71800 | Canola | cytosol | 42.4 | 24.21 |
| CDY33027 | Canola | cytosol | 42.4 | 24.08 |
| CDX78894 | Canola | cytosol | 40.55 | 23.66 |
| CDX80282 | Canola | cytosol | 41.94 | 23.51 |
| CDX84915 | Canola | cytosol | 36.41 | 23.51 |
| CDY71567 | Canola | cytosol | 43.32 | 23.38 |
| CDY23772 | Canola | cytosol | 28.57 | 23.31 |
| CDY32394 | Canola | cytosol | 41.01 | 23.3 |
| CDY17608 | Canola | cytosol | 42.86 | 22.91 |
| CDY19516 | Canola | cytosol | 36.41 | 22.44 |
| CDY03068 | Canola | nucleus | 41.94 | 22.36 |
| CDY07015 | Canola | cytosol | 39.63 | 22.34 |
| CDX93257 | Canola | cytosol | 38.71 | 21.59 |
| CDY69271 | Canola | cytosol | 35.48 | 21.15 |
| CDY43734 | Canola | mitochondrion, nucleus, plastid, vacuole | 18.89 | 21.13 |
| CDY03069 | Canola | plastid | 43.32 | 21.08 |
| CDY17609 | Canola | plastid | 41.01 | 20.09 |
| CDY40874 | Canola | mitochondrion | 32.72 | 18.93 |
| CDY56208 | Canola | nucleus | 34.1 | 18.69 |
| CDX72756 | Canola | cytosol | 33.64 | 17.46 |
| CDY65844 | Canola | extracellular | 21.2 | 17.23 |
| CDY70726 | Canola | cytosol | 17.05 | 16.67 |
| CDY45456 | Canola | cytosol | 17.05 | 15.74 |
| CDY32393 | Canola | mitochondrion | 16.13 | 14.96 |
| CDY68693 | Canola | cytosol | 30.41 | 13.72 |
| CDY01863 | Canola | cytosol | 15.21 | 13.25 |
Protein Annotations
| EnsemblPlants:CDY37492 | EnsemblPlantsGene:GSBRNA2T00064097001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-assoc_dom_typ1 |
| InterPro:F-box-assoc_interact_dom | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31790 | PFAM:PF00646 |
| PFAM:PF07734 | ProteinID:CDY37492 | ProteinID:CDY37492.1 | SMART:SM00256 | SUPFAM:SSF81383 | TIGRFAMs:TIGR01640 |
| UniParc:UPI0004EEA5AB | UniProt:A0A078HI15 | MapMan:35.1 | : | : | : |
Description
BnaC01g37400DBnaC01g37400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI15]
Coordinates
chrLK032401:+:290845..291908
Molecular Weight (calculated)
25149.6 Da
IEP (calculated)
9.964
GRAVY (calculated)
-0.249
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAMSDLTED MTKEIFFRVP LTSLSAVRST CKNWNSISKS QQFLRFMVKD FRVCSLKFDL QGIRSKENFV HPSIKQVSVF DPVAISQIFQ CEGLLLCVTK
101: DKSRLLVWNP YLGKMRWIQP RNSFHMLYKY AIGYDKNQIW VTKNKIDPCE VSWSKFLRTT FRCMDGNQAG SFFIDEEKKI VVVVDLESYK GGIVRNQKTN
201: VIGQDGYFKS VNMGKAN
101: DKSRLLVWNP YLGKMRWIQP RNSFHMLYKY AIGYDKNQIW VTKNKIDPCE VSWSKFLRTT FRCMDGNQAG SFFIDEEKKI VVVVDLESYK GGIVRNQKTN
201: VIGQDGYFKS VNMGKAN
001: MATVTDLPDD LVREIFSRVP LTSLRAVRST CKKWNAISKY DILGKKAAAK NQFLEFMVTD SRVCSLRLDL QGIRSEEDLI DLSIKQISIP NKVDQVEISQ
101: VYHCDGLLLC IAKDNSSVMV WNPYLGQTKL IQPRKKLHRY DKFALGYDNN RNHKILRFLY EGSPRNVIID VYDFSSDSWR VLDIDIDWHE LFSHNSVSLK
201: GNTYFFGRKG PRLPMLFKPP SRRFEYLTLS CVRNEKLAVL YSHLNRFGTI EICISTKIDP SAVSWTTFLR IDMTLINGLP DNFFVHSYAT SFFFDEEKKV
301: AVLFGTNRYR GRETCQYYQR ACIVGDSGYF KAVNIELVFN SQLQSCQLVS SSYVPSLVQL QD
101: VYHCDGLLLC IAKDNSSVMV WNPYLGQTKL IQPRKKLHRY DKFALGYDNN RNHKILRFLY EGSPRNVIID VYDFSSDSWR VLDIDIDWHE LFSHNSVSLK
201: GNTYFFGRKG PRLPMLFKPP SRRFEYLTLS CVRNEKLAVL YSHLNRFGTI EICISTKIDP SAVSWTTFLR IDMTLINGLP DNFFVHSYAT SFFFDEEKKV
301: AVLFGTNRYR GRETCQYYQR ACIVGDSGYF KAVNIELVFN SQLQSCQLVS SSYVPSLVQL QD
Arabidopsis Description
F-box protein At1g54550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.