CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32394	Canola	cytosol	71.27	67.54
CDY67601	Canola	cytosol	70.17	66.49
CDY32393	Canola	mitochondrion	42.27	65.38
CDX82226	Canola	cytosol	44.75	61.6
CDY70218	Canola	plastid	10.5	48.72
AT1G66490.1	Thale cress	cytosol	45.86	46.11
CDX78893	Canola	cytosol	19.89	44.44
CDX94566	Canola	cytosol	26.24	43.78
CDY43731	Canola	cytosol	20.99	43.43
CDY37491	Canola	cytosol	11.6	43.3
CDY37477	Canola	nucleus	21.82	42.25
CDY37492	Canola	cytosol	25.14	41.94
CDY43730	Canola	cytosol	29.01	41.34
CDY45455	Canola	cytosol	11.88	40.57
CDY43729	Canola	cytosol	42.54	40.1
CDX84915	Canola	cytosol	37.02	39.88
AT1G59680.2	Thale cress	cytosol	34.53	39.43
CDY25355	Canola	cytosol	40.33	39.35
CDY62603	Canola	cytosol	41.16	39.21
CDX99431	Canola	cytosol	20.99	38.0
CDX82277	Canola	cytosol	41.71	37.94
CDY43733	Canola	cytosol	33.7	37.54
CDX80282	Canola	cytosol	40.06	37.47
CDY33027	Canola	cytosol	39.5	37.43
CDY23772	Canola	cytosol	27.35	37.22
CDX82230	Canola	cytosol	41.44	37.13
CDY69763	Canola	cytosol	25.97	36.86
CDY71800	Canola	cytosol	38.4	36.58
CDY70219	Canola	cytosol	17.96	36.52
CDY19516	Canola	cytosol	35.36	36.36
CDY33422	Canola	cytosol	42.54	36.32
CDY17608	Canola	cytosol	40.33	35.96
CDY03068	Canola	nucleus	40.33	35.87
CDY22955	Canola	cytosol	19.61	35.86
CDY71567	Canola	cytosol	39.5	35.57
AT3G14030.1	Thale cress	cytosol	19.61	35.5
CDY40874	Canola	mitochondrion	36.74	35.47
CDY07015	Canola	cytosol	37.02	34.81
CDY45456	Canola	cytosol	22.38	34.47
AT3G13820.1	Thale cress	nucleus	39.5	34.46
CDX78894	Canola	cytosol	35.36	34.41
CDX93257	Canola	cytosol	36.46	33.93
CDY17609	Canola	plastid	41.16	33.63
CDY03069	Canola	plastid	41.16	33.41
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	32.87	33.33
CDY67865	Canola	cytosol	43.92	32.19
CDY69271	Canola	cytosol	32.04	31.87
CDY37490	Canola	mitochondrion	14.64	31.55
CDY01863	Canola	cytosol	21.55	31.33
CDX72756	Canola	cytosol	35.36	30.62
CDY56208	Canola	nucleus	33.43	30.56
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	16.3	30.41
CDY65844	Canola	extracellular	22.38	30.34
CDY68693	Canola	cytosol	37.29	28.07
CDY57669	Canola	cytosol	30.11	27.59
CDY70726	Canola	cytosol	16.85	27.48

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078JQC4	EnsemblPlants:CDY67602	ProteinID:CDY67602	ProteinID:CDY67602.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00065178001	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR44355	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EF2A27	SEG:seg

Description

BnaCnng55640DBnaCnng55640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQC4]

Coordinates

chrLK036298:+:7271..8398

Molecular Weight (calculated)

41486.0 Da

IEP (calculated)

9.190

GRAVY (calculated)

-0.192

Length

362 amino acids

Sequence
(BLAST)

001: MATTISDLPE DLVTKILSRV SLTSLRSVRC TCKTWNALSE NHVFGKTAAG STFQGFMVID SKLCSMKLDL QGTRNNGNLV YRPTTKRADI CKVFHWDGLL
101: LCVTKSRLVV WNPYLRQIKW IQPMDKLHLG DMYGVGYENN NNNNRNHKIL RLLNYSMWSE LGPFFQIDDF NSNSWRVLDV DPGSCVIKSG VSLKGNTYFL
201: AEEETWVESF VSESFGQRLV LPFGACVRFS KTVVLSCVRD EQLAVLHHGK DDRLMDIWIT TRIEPNVASW SRFLRVEMRP FRFVSESFFI YEENKLALVS
301: GFCIVLTTIY KRAYIIEEHG NIKNVNIGKA RDPGNKLVFS SYAPSLVQLQ INGRGKTKER DY

Best Arabidopsis Sequence Match ( AT1G66490.1 )
(BLAST)

001: MRTISDLPVA LVEEILSRVP LTSLSAVRST CKTWNALSKT QIFGKTRQQF LGFMMIDFGL YSIKFDLQGL NYESDFVEPS IKRVSILDQL DIFKVFHCEG
101: LLLCVFRGNR WPVVWNPYLG GTGWIQPISD FHKYQVSDKF AFGYENKNHF FGFYDIYDLN SSAWKVLDVN PDCDIKCGVS LKGKTYFFAK EIAKAPNVKD
201: FLVCFDFTAE RFGPRLPLPF HSCGLFSEHV TLSCVRDEHL AVLYRRYNGV MEIYITTKIE PNEVFWSNFL KVDLTTFPDR FYGSRSHYFF IDEEKKVAVV
301: FKNEPEWTMD CSYQTAYIIG KGGYLKSVKF GETPNDRKHN NAWNINSFML SSYVPSLVQL

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT1G66490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.