CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021825.1-P	Field mustard	cytosol	97.74	87.25
CDY69271	Canola	cytosol	66.92	48.9
CDY70218	Canola	plastid	11.28	38.46
CDY45455	Canola	cytosol	15.04	37.74
CDY69763	Canola	cytosol	36.09	37.65
CDY37491	Canola	cytosol	13.53	37.11
AT3G19560.1	Thale cress	cytosol	45.49	33.52
CDY25355	Canola	cytosol	46.62	33.42
AT5G51000.1	Thale cress	cytosol	44.36	31.22
CDX82277	Canola	cytosol	45.86	30.65
CDY19516	Canola	cytosol	39.47	29.83
CDY70219	Canola	cytosol	19.92	29.78
CDY37490	Canola	mitochondrion	18.8	29.76
CDY32393	Canola	mitochondrion	25.94	29.49
CDX82226	Canola	cytosol	28.95	29.28
CDX82230	Canola	cytosol	43.98	28.96
CDX84915	Canola	cytosol	36.47	28.87
CDY37492	Canola	cytosol	23.31	28.57
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	20.3	27.84
CDY33422	Canola	cytosol	43.98	27.59
CDY67602	Canola	cytosol	37.22	27.35
CDY67601	Canola	cytosol	38.72	26.96
CDY22955	Canola	cytosol	19.92	26.77
CDX99431	Canola	cytosol	19.92	26.5
CDY32394	Canola	cytosol	37.59	26.18
CDY03068	Canola	nucleus	39.47	25.8
CDY37477	Canola	nucleus	18.05	25.67
CDY43730	Canola	cytosol	24.44	25.59
CDY17608	Canola	cytosol	38.72	25.37
CDY62603	Canola	cytosol	35.71	25.0
CDY57669	Canola	cytosol	36.84	24.81
CDY33027	Canola	cytosol	35.34	24.61
CDY43729	Canola	cytosol	35.34	24.48
CDY43733	Canola	cytosol	29.7	24.31
CDY45456	Canola	cytosol	21.43	24.26
CDY71800	Canola	cytosol	34.59	24.21
CDY07015	Canola	cytosol	34.96	24.16
CDY01863	Canola	cytosol	22.56	24.1
CDX80282	Canola	cytosol	34.96	24.03
CDX93257	Canola	cytosol	34.96	23.91
CDY40874	Canola	mitochondrion	33.46	23.73
CDY17609	Canola	plastid	39.1	23.48
CDX78893	Canola	cytosol	14.29	23.46
CDX78894	Canola	cytosol	32.33	23.12
CDY03069	Canola	plastid	37.97	22.65
CDY71567	Canola	cytosol	34.21	22.64
CDY70726	Canola	cytosol	18.8	22.52
CDY65844	Canola	extracellular	22.18	22.1
CDY67865	Canola	cytosol	40.6	21.86
CDY43731	Canola	cytosol	14.29	21.71
CDX94566	Canola	cytosol	17.29	21.2
CDX72756	Canola	cytosol	31.2	19.86
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	25.94	19.33
CDY56208	Canola	nucleus	28.2	18.94
CDY68693	Canola	cytosol	31.2	17.26

Protein Annotations

EnsemblPlants:CDY23772	EnsemblPlantsGene:GSBRNA2T00024120001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY23772	ProteinID:CDY23772.1	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI0004EF378F	UniProt:A0A078GF78	MapMan:35.1	:	:

Description

BnaC04g43500DBnaC04g43500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF78]

Coordinates

chrLK032148:-:361248..362302

Molecular Weight (calculated)

30778.0 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.229

Length

266 amino acids

Sequence
(BLAST)

001: MTMITDLSLD LVEEILSKVS LTSLKAVKST CKGWNTLSKD ESFTKKHSAI EFPVFLTCKA YRFQRRFNLH RIHNIKDLPC IKETVNQCDG LLLCLDEGNR
101: QRLFHEIYDF KSSSWRGNSY FVVDGKILGF DFTREKFGPF LDLPFETHNK IPYSCVRGEQ LAVLFQRHLY ELVIWITTEI KPDAVSWSSF CKVDMKPFLG
201: DHGFKVGSFV IDKEKKVAVV CGDCEERRDH IYKGQCYVAG EDGCYQEKTD MEDIVISYVP SFVQLQ

Best Arabidopsis Sequence Match ( AT1G32140.1 )
(BLAST)

001: MTMMSDLSLD LVEEILCRVP ITSLKAVRSS CKLWNVLSKN RILCKTEARN QFLGFTIMNH RLYSMRFNLH GIGLNENSEE FIDPSIKPIG NLLNQVEISK
101: VFYCEGLLLC VTRNHSSKLV VWNPYLGEIR WIKTRNDYHI GVTYALGYDN NKNHMILRFF SEQGYYEIYD MNSSDSWDCF YGIPNKGLKC YQPGASLNGN
201: AYFLTEGREV MEGYDCLLGF DFTTKKFGPL LSLSFSHDFI ETGRLSCVKG EKLAVLYQRC YTYEMEVWVT TKIEPNAVSW SKFLAVEMEP LTSLKFNDDS
301: GSFFIDEEKK IVVVFDIDES ERNNTAYIIG DYGCLKEVDL DEVVNPQESV EVGDRIYSFS PFVCSCSYVP SLVKFKEDAE HERKDKKRKS KRKRTNKDGY
401: DFILCFDFTT ERFGQILPLP FKHSFRDTWT LSSVKEEKLA VAVLYWKNTC VMIEIWMTIK IDPNVESWSK FLRVDRKPCI DLRFDDRNDS FFIDEEKKVV
501: VFFSSDKVKT STAYVIGDNR YLRTVDLEKA ANSQESVEVG ERVYCFSPLV CSCSYYVPSL VKINHNAGRK RKEKKTKRKS KDKQMKLSNK V

Arabidopsis Description

Putative F-box protein At1g32140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ9]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.