CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67601	Canola	cytosol	95.55	95.55
CDX82226	Canola	cytosol	58.12	84.41
CDY32393	Canola	mitochondrion	45.29	73.93
CDY67602	Canola	cytosol	67.54	71.27
AT1G66490.1	Thale cress	cytosol	45.03	47.78
CDY70218	Canola	plastid	9.42	46.15
CDX78893	Canola	cytosol	18.32	43.21
CDX94566	Canola	cytosol	24.08	42.4
CDY37491	Canola	cytosol	10.73	42.27
CDY37477	Canola	nucleus	20.68	42.25
CDY43730	Canola	cytosol	27.75	41.73
CDY25355	Canola	cytosol	40.31	41.51
CDY37492	Canola	cytosol	23.3	41.01
CDX84915	Canola	cytosol	35.86	40.77
CDY45455	Canola	cytosol	11.26	40.57
CDX82277	Canola	cytosol	42.15	40.45
CDY43729	Canola	cytosol	40.58	40.36
CDY43731	Canola	cytosol	18.32	40.0
AT1G59680.2	Thale cress	cytosol	32.98	39.75
CDY33027	Canola	cytosol	38.48	38.48
CDY71800	Canola	cytosol	37.96	38.16
CDY03068	Canola	nucleus	40.58	38.08
CDY17608	Canola	cytosol	40.31	37.93
CDX82230	Canola	cytosol	40.05	37.87
CDY69763	Canola	cytosol	25.13	37.65
CDY23772	Canola	cytosol	26.18	37.59
CDY71567	Canola	cytosol	39.53	37.56
CDX99431	Canola	cytosol	19.63	37.5
AT3G14030.1	Thale cress	cytosol	19.63	37.5
CDX80282	Canola	cytosol	37.96	37.47
CDY62603	Canola	cytosol	37.17	37.37
CDY43733	Canola	cytosol	31.68	37.23
CDY45456	Canola	cytosol	22.77	37.02
CDY33422	Canola	cytosol	40.84	36.79
AT3G13820.1	Thale cress	nucleus	39.79	36.63
CDX78894	Canola	cytosol	35.6	36.56
CDY70219	Canola	cytosol	17.02	36.52
CDY40874	Canola	mitochondrion	35.6	36.27
CDY17609	Canola	plastid	41.88	36.12
CDY19516	Canola	cytosol	33.25	36.08
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	33.51	35.85
CDY03069	Canola	plastid	41.62	35.65
CDY22955	Canola	cytosol	18.32	35.35
CDY07015	Canola	cytosol	35.08	34.81
CDX93257	Canola	cytosol	35.34	34.7
CDY69271	Canola	cytosol	32.46	34.07
CDY01863	Canola	cytosol	21.73	33.33
CDY67865	Canola	cytosol	42.41	32.79
CDX72756	Canola	cytosol	35.6	32.54
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	16.49	32.47
CDY37490	Canola	mitochondrion	14.14	32.14
CDY56208	Canola	nucleus	32.72	31.57
CDY65844	Canola	extracellular	21.99	31.46
CDY70726	Canola	cytosol	17.8	30.63
CDY57669	Canola	cytosol	28.8	27.85
CDY68693	Canola	cytosol	34.55	27.44

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078H4S2	EnsemblPlants:CDY32394	ProteinID:CDY32394	ProteinID:CDY32394.1
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00051973001	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PFAM:PF00646	PFAM:PF07734
PFscan:PS50181	PANTHER:PTHR44355	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EE4580	:	:	:	:	:

Description

BnaC03g41780DBnaC03g41780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H4S2]

Coordinates

chrLK032294:-:82192..83340

Molecular Weight (calculated)

44500.4 Da

IEP (calculated)

5.756

GRAVY (calculated)

-0.175

Length

382 amino acids

Sequence
(BLAST)

001: MAMAMSDIPG ELVTEILSRV PLTSLRALRC TCKTWEALSE THIVGKTDAE GTFLGFMVID YNLCSMKLDL QGTRNNGNLV YIPSIERVWF LEQAEIWEVF
101: HWDGLLLCVI RDETRLLVWN PYLRQLRWIQ TRDKLHSAYM YGLGYENNNN NDRNHKILRV LDVTKSSEPG PLFEIYDFNS SSWRVLDVNP GNCVIKSGVS
201: LKGNTYFLAE ETWLEGFAVE SQYILLCFDF TAERFGQRIV LPFEAYVSFS KTVVLSRVRD EQLAVLHQPE DNNVLEFWIT SMIEPNAASW TRFLRVEMTP
301: FSFVTESFFI DEEKKLALVS GFFKLFRHIY KRAYIIREQG CIESVEMRKD REPGNKLVFS SYSPSLVQLQ INGRGKWKER DY

Best Arabidopsis Sequence Match ( AT1G66490.1 )
(BLAST)

001: MRTISDLPVA LVEEILSRVP LTSLSAVRST CKTWNALSKT QIFGKTRQQF LGFMMIDFGL YSIKFDLQGL NYESDFVEPS IKRVSILDQL DIFKVFHCEG
101: LLLCVFRGNR WPVVWNPYLG GTGWIQPISD FHKYQVSDKF AFGYENKNHF FGFYDIYDLN SSAWKVLDVN PDCDIKCGVS LKGKTYFFAK EIAKAPNVKD
201: FLVCFDFTAE RFGPRLPLPF HSCGLFSEHV TLSCVRDEHL AVLYRRYNGV MEIYITTKIE PNEVFWSNFL KVDLTTFPDR FYGSRSHYFF IDEEKKVAVV
301: FKNEPEWTMD CSYQTAYIIG KGGYLKSVKF GETPNDRKHN NAWNINSFML SSYVPSLVQL

Arabidopsis Description

F-box and associated interaction domains-containing protein [Source:TAIR;Acc:AT1G66490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.