CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021823.1-P	Field mustard	cytosol	98.9	98.9
CDY23772	Canola	cytosol	48.9	66.92
AT3G19560.1	Thale cress	cytosol	40.38	40.72
CDY37477	Canola	nucleus	20.88	40.64
CDY25355	Canola	cytosol	40.93	40.16
CDY70218	Canola	plastid	8.52	39.74
CDY69763	Canola	cytosol	27.47	39.22
CDY45455	Canola	cytosol	11.26	38.68
CDX82277	Canola	cytosol	42.03	38.44
CDY37491	Canola	cytosol	10.16	38.14
CDY19516	Canola	cytosol	36.81	38.07
AT5G51000.1	Thale cress	cytosol	39.01	37.57
CDX82230	Canola	cytosol	41.21	37.13
CDX78893	Canola	cytosol	16.21	36.42
CDY22955	Canola	cytosol	19.51	35.86
CDY37492	Canola	cytosol	21.15	35.48
CDY43730	Canola	cytosol	24.45	35.04
CDY03068	Canola	nucleus	38.74	34.64
CDY33422	Canola	cytosol	40.11	34.43
CDY17608	Canola	cytosol	37.91	33.99
CDX84915	Canola	cytosol	31.32	33.93
CDY33027	Canola	cytosol	34.89	33.25
CDY71800	Canola	cytosol	34.62	33.16
CDX99431	Canola	cytosol	18.13	33.0
CDY67601	Canola	cytosol	34.34	32.72
CDY43731	Canola	cytosol	15.66	32.57
CDY32393	Canola	mitochondrion	20.88	32.48
CDY32394	Canola	cytosol	34.07	32.46
CDY07015	Canola	cytosol	34.07	32.21
CDY67602	Canola	cytosol	31.87	32.04
CDX80282	Canola	cytosol	34.07	32.04
CDY43729	Canola	cytosol	33.52	31.77
CDX93257	Canola	cytosol	33.79	31.62
CDY62603	Canola	cytosol	32.69	31.32
CDX82226	Canola	cytosol	22.25	30.8
CDY43733	Canola	cytosol	27.47	30.77
CDX78894	Canola	cytosol	31.32	30.65
CDX94566	Canola	cytosol	18.13	30.41
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	16.21	30.41
CDY71567	Canola	cytosol	33.52	30.35
CDY17609	Canola	plastid	36.81	30.25
CDY70219	Canola	cytosol	14.56	29.78
CDY03069	Canola	plastid	36.26	29.6
CDY45456	Canola	cytosol	18.96	29.36
CDY40874	Canola	mitochondrion	29.67	28.8
CDX72756	Canola	cytosol	31.87	27.75
CDY01863	Canola	cytosol	18.96	27.71
CDY56208	Canola	nucleus	28.85	26.52
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	25.55	26.05
CDY67865	Canola	cytosol	35.16	25.91
CDY65844	Canola	extracellular	18.96	25.84
CDY37490	Canola	mitochondrion	11.54	25.0
CDY70726	Canola	cytosol	14.56	23.87
CDY57669	Canola	cytosol	25.82	23.8
CDY68693	Canola	cytosol	30.49	23.08

Protein Annotations

EnsemblPlants:CDY69271	EnsemblPlantsGene:GSBRNA2T00086129001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790
PFAM:PF00646	PFAM:PF07734	ProteinID:CDY69271	ProteinID:CDY69271.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0004EE0793	UniProt:A0A078JUN7	MapMan:35.1	:

Description

BnaAnng29880DBnaAnng29880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUN7]

Coordinates

chrLK039003:+:1670..2764

Molecular Weight (calculated)

42604.2 Da

IEP (calculated)

8.891

GRAVY (calculated)

-0.435

Length

364 amino acids

Sequence
(BLAST)

001: MTMITDLSLD LVEEILSKVP LTSLKAVKST CKRWNTLSKD ESFTKKHSAK EFPLFLTFDY YFSQRRFNVH RIHYNIKDLP CIKEIGKLHS PIKLHILHHC
101: GGLLLGYAEE KLVVWNPSLA QTRWIELRNK RRGLGQCAIG YDNNKNHKVL VRFYNVHENN IINEHEIRHE IYDFKSSSWR GHDIPNPKRL RERGVSVKGD
201: NYFVVDGKLL GFDFTKERFG PFMDLPFESS DDFEYDRIPY SCVRGEQLAV LFQRHLCDLV IWITTKIEPD AVSWSNFFKV DLKPFLGFDH WFKVRSFVID
301: KEKKIGVVCG TELKSHINEE KCYVVEEDGC YQAKTGKQYV FSYVPSSLQI QVPSSCGKRK GRDY

Best Arabidopsis Sequence Match ( AT1G32140.1 )
(BLAST)

001: MTMMSDLSLD LVEEILCRVP ITSLKAVRSS CKLWNVLSKN RILCKTEARN QFLGFTIMNH RLYSMRFNLH GIGLNENSEE FIDPSIKPIG NLLNQVEISK
101: VFYCEGLLLC VTRNHSSKLV VWNPYLGEIR WIKTRNDYHI GVTYALGYDN NKNHMILRFF SEQGYYEIYD MNSSDSWDCF YGIPNKGLKC YQPGASLNGN
201: AYFLTEGREV MEGYDCLLGF DFTTKKFGPL LSLSFSHDFI ETGRLSCVKG EKLAVLYQRC YTYEMEVWVT TKIEPNAVSW SKFLAVEMEP LTSLKFNDDS
301: GSFFIDEEKK IVVVFDIDES ERNNTAYIIG DYGCLKEVDL DEVVNPQESV EVGDRIYSFS PFVCSCSYVP SLVKFKEDAE HERKDKKRKS KRKRTNKDGY
401: DFILCFDFTT ERFGQILPLP FKHSFRDTWT LSSVKEEKLA VAVLYWKNTC VMIEIWMTIK IDPNVESWSK FLRVDRKPCI DLRFDDRNDS FFIDEEKKVV
501: VFFSSDKVKT STAYVIGDNR YLRTVDLEKA ANSQESVEVG ERVYCFSPLV CSCSYYVPSL VKINHNAGRK RKEKKTKRKS KDKQMKLSNK V

Arabidopsis Description

Putative F-box protein At1g32140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ9]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.