Factsheet for Bra021823.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69271	Canola	cytosol	98.9	98.9
Bra021825.1-P	Field mustard	cytosol	51.92	63.42
AT3G19560.1	Thale cress	cytosol	40.11	40.44
Bra022464.1-P	Field mustard	cytosol	40.93	39.11
Bra001764.1-P	Field mustard	cytosol	41.48	37.94
AT5G51000.1	Thale cress	cytosol	38.74	37.3
Bra001800.1-P	Field mustard	cytosol	40.66	36.63
Bra020991.1-P	Field mustard	cytosol	37.64	34.16
Bra024829.1-P	Field mustard	cytosol	37.64	33.74
Bra002578.1-P	Field mustard	cytosol	33.79	33.06
Bra001803.1-P	Field mustard	cytosol	33.79	32.98
Bra021512.1-P	Field mustard	plastid	34.89	32.4
Bra017069.1-P	Field mustard	cytosol	34.07	32.21
Bra033383.1-P	Field mustard	cytosol	34.07	32.12
Bra041044.1-P	Field mustard	cytosol	28.85	32.11
Bra029507.1-P	Field mustard	cytosol	34.34	31.57
Bra013348.1-P	Field mustard	cytosol	31.87	31.18
Bra017247.1-P	Field mustard	mitochondrion	29.12	30.99
Bra018376.1-P	Field mustard	cytosol	19.78	30.9
Bra017242.1-P	Field mustard	cytosol	32.69	30.67
Bra041045.1-P	Field mustard	nucleus	31.87	30.61
Bra024830.1-P	Field mustard	nucleus, plastid	36.54	30.09
Bra017228.1-P	Field mustard	cytosol	18.68	26.67
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	28.85	26.65
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	25.55	26.05

Protein Annotations

EnsemblPlants:Bra021823.1	EnsemblPlants:Bra021823.1-P	EnsemblPlantsGene:Bra021823	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR31790	PFAM:PF00646	PFAM:PF07734	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR01640	UniParc:UPI00025452C8	UniProt:M4DZ76	MapMan:35.1	:	:

Description

AT1G32140 (E=1e-055) | F-box family protein

Coordinates

chrA04:+:14721881..14722975

Molecular Weight (calculated)

42536.1 Da

IEP (calculated)

9.011

GRAVY (calculated)

-0.446

Length

364 amino acids

Sequence
(BLAST)

001: MTMITDLSLD LVEEILSKVP LTSLKAVKST CKRWNTLSKD ESFTKKHSAK EFPLFLTFDY YFSQRRFNVH RIHYNTKDLP CIKEIGKLHS PIKLHILHHC
101: GGLLLGYAEE KLVVWNPSLA QTRWIELRNK RRGLGQCAIG YDNNKNHKVL VRFYNVHENN IINEHEIRHG IYDFKSSSWR GHDIPNPKRL RERGVSVKGD
201: NYFVVDGKLL GFDFTKERFG PFMDLPFESS DDFEYDRIPY SCVRGEQLAV LFQRHLCDLV IWITTKIEPD TVSWSNFFKV DLKPFLGFDH WFKVRSFVID
301: KEKKIGVVCG TELKSHINEE KCYVVEEDGC YQAKTGKQYV FSYVPSSVQI QVPSSCGKRK GRDY

Best Arabidopsis Sequence Match ( AT1G32140.1 )
(BLAST)

001: MTMMSDLSLD LVEEILCRVP ITSLKAVRSS CKLWNVLSKN RILCKTEARN QFLGFTIMNH RLYSMRFNLH GIGLNENSEE FIDPSIKPIG NLLNQVEISK
101: VFYCEGLLLC VTRNHSSKLV VWNPYLGEIR WIKTRNDYHI GVTYALGYDN NKNHMILRFF SEQGYYEIYD MNSSDSWDCF YGIPNKGLKC YQPGASLNGN
201: AYFLTEGREV MEGYDCLLGF DFTTKKFGPL LSLSFSHDFI ETGRLSCVKG EKLAVLYQRC YTYEMEVWVT TKIEPNAVSW SKFLAVEMEP LTSLKFNDDS
301: GSFFIDEEKK IVVVFDIDES ERNNTAYIIG DYGCLKEVDL DEVVNPQESV EVGDRIYSFS PFVCSCSYVP SLVKFKEDAE HERKDKKRKS KRKRTNKDGY
401: DFILCFDFTT ERFGQILPLP FKHSFRDTWT LSSVKEEKLA VAVLYWKNTC VMIEIWMTIK IDPNVESWSK FLRVDRKPCI DLRFDDRNDS FFIDEEKKVV
501: VFFSSDKVKT STAYVIGDNR YLRTVDLEKA ANSQESVEVG ERVYCFSPLV CSCSYYVPSL VKINHNAGRK RKEKKTKRKS KDKQMKLSNK V

Arabidopsis Description

Putative F-box protein At1g32140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ9]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.