Factsheet for Bra013348.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78894	Canola	cytosol	98.39	98.39
Bra020991.1-P	Field mustard	cytosol	46.77	43.39
Bra021512.1-P	Field mustard	plastid	38.44	36.48
Bra001803.1-P	Field mustard	cytosol	36.56	36.46
Bra002578.1-P	Field mustard	cytosol	36.29	36.29
Bra024829.1-P	Field mustard	cytosol	39.25	35.96
Bra033383.1-P	Field mustard	cytosol	37.1	35.75
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	33.87	35.29
Bra022464.1-P	Field mustard	cytosol	35.75	34.91
Bra001764.1-P	Field mustard	cytosol	37.1	34.67
Bra001800.1-P	Field mustard	cytosol	37.63	34.65
Bra017242.1-P	Field mustard	cytosol	36.02	34.54
Bra017228.1-P	Field mustard	cytosol	23.39	34.12
Bra024830.1-P	Field mustard	nucleus, plastid	40.32	33.94
Bra041045.1-P	Field mustard	nucleus	34.14	33.51
Bra017069.1-P	Field mustard	cytosol	34.68	33.51
Bra017247.1-P	Field mustard	mitochondrion	30.65	33.33
Bra021825.1-P	Field mustard	cytosol	26.61	33.22
Bra041044.1-P	Field mustard	cytosol	28.76	32.72
Bra018376.1-P	Field mustard	cytosol	20.43	32.62
Bra021823.1-P	Field mustard	cytosol	31.18	31.87
Bra029507.1-P	Field mustard	cytosol	33.33	31.31
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	30.11	28.43

Protein Annotations

EnsemblPlants:Bra013348.1	EnsemblPlants:Bra013348.1-P	EnsemblPlantsGene:Bra013348	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR44355
PFAM:PF00646	PFAM:PF07734	SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002546272
UniProt:M4DA38	MapMan:35.1	:	:	:	:

Description

AT3G13680 (E=7e-053) | F-box family protein

Coordinates

chrA01:-:5121384..5123035

Molecular Weight (calculated)

43115.2 Da

IEP (calculated)

9.857

GRAVY (calculated)

-0.310

Length

372 amino acids

Sequence
(BLAST)

001: MMTTMNDLPH DLIGEKILTK VSITSLIAVR CTCKLWNALS KEFIVGRETS RQHREFLGFM MASNKIYPFS FDIQGIRKHN SSVDPSMKQD NTKLLVWNPY
101: VGQTRWIRPR KCFKKSDLYA IGYDNNNKVR NYKILRLDRY CGIRLEIYDF SSDSWSVLGV ISHCIIYQFR RGVTLKGCNY YLGSVRKTST APSFKSCLLC
201: FDYTRERYGQ PLPIPYNNNF HKQAVSLSTA REENIAALYF DSRLYGTSEI WVTNKIEHNA VSWSKFFKVE MTMMNQLRVL NFGLNADIFF VDEENKVAVV
301: ITNSRSRSCN QPKASIIGED GYFKSIKIGE MNSNLPTELY PLLVFSPYIP SLVQINRPLE KKKRKRCLTA LD

Best Arabidopsis Sequence Match ( AT1G25150.2 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.