Factsheet for Bra029507.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94566	Canola	cytosol	39.39	71.89
AT1G66490.1	Thale cress	cytosol	40.91	45.0
Bra001803.1-P	Field mustard	cytosol	41.67	44.24
Bra021512.1-P	Field mustard	plastid	38.64	39.03
Bra001764.1-P	Field mustard	cytosol	38.89	38.69
Bra001800.1-P	Field mustard	cytosol	38.64	37.87
Bra022464.1-P	Field mustard	cytosol	36.36	37.8
Bra020991.1-P	Field mustard	cytosol	38.13	37.66
Bra017242.1-P	Field mustard	cytosol	36.87	37.63
Bra041044.1-P	Field mustard	cytosol	31.06	37.61
AT1G59680.2	Thale cress	cytosol	30.05	37.54
Bra021825.1-P	Field mustard	cytosol	27.78	36.91
Bra002578.1-P	Field mustard	cytosol	34.09	36.29
Bra024829.1-P	Field mustard	cytosol	36.87	35.96
Bra041045.1-P	Field mustard	nucleus	34.34	35.88
AT3G14030.1	Thale cress	cytosol	17.93	35.5
AT3G13820.1	Thale cress	nucleus	37.12	35.42
Bra017247.1-P	Field mustard	mitochondrion	30.56	35.38
Bra021823.1-P	Field mustard	cytosol	31.57	34.34
Bra017069.1-P	Field mustard	cytosol	32.83	33.77
Bra033383.1-P	Field mustard	cytosol	32.83	33.68
Bra013348.1-P	Field mustard	cytosol	31.31	33.33
Bra024830.1-P	Field mustard	nucleus, plastid	37.12	33.26
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	29.04	32.21
Bra017228.1-P	Field mustard	cytosol	20.2	31.37
Bra018376.1-P	Field mustard	cytosol	18.43	31.33
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	29.04	29.19

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra029507	EnsemblPlants:Bra029507.1	EnsemblPlants:Bra029507.1-P	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	UniProt:M4EL40	PFAM:PF00646	PFAM:PF07734	PFscan:PS50181
PANTHER:PTHR31790	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI00025426F8

Description

AT4G17200 (E=4e-082) | F-box family protein

Coordinates

chrA09:-:17476471..17477765

Molecular Weight (calculated)

46439.3 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.369

Length

396 amino acids

Sequence
(BLAST)

001: MTTMSNLPEE LVREILSRVP LTSLRKLRCT CRTWNALSKT QVFGKETARN QFLGFTVING RVCSLRLDFQ GIHNKGDLVH KSTKKISKLD HTKIEEVFHS
101: DGLLLCVRNR SNFVVWNPYL GQTRCIPPAS RDFRFYDMFC FGYDKNNRNH KILRFCYDND ESLFCFELFD FKTSSWRLLD IEPDVDLDVY RSGVSLKGNT
201: YFVAQTNRPG VIDVLLCFDF TTERFWRPLP FHYDAVEHVV LSCVREEKLA VLYQIENTME IWITTKIEYD DVSWSKFLEV EMTPLNGFDY DFDTETESFF
301: IDEDKKFAVV GGECENKPIC SATRNQPTEQ EETQRLLLSK ETKETESFFI DEEKEVAVVY IVFEEINQSR ARPIAIKPPR WIPEICECRR SSGVWT

Best Arabidopsis Sequence Match ( AT1G54550.1 )
(BLAST)

001: MATVTDLPDD LVREIFSRVP LTSLRAVRST CKKWNAISKY DILGKKAAAK NQFLEFMVTD SRVCSLRLDL QGIRSEEDLI DLSIKQISIP NKVDQVEISQ
101: VYHCDGLLLC IAKDNSSVMV WNPYLGQTKL IQPRKKLHRY DKFALGYDNN RNHKILRFLY EGSPRNVIID VYDFSSDSWR VLDIDIDWHE LFSHNSVSLK
201: GNTYFFGRKG PRLPMLFKPP SRRFEYLTLS CVRNEKLAVL YSHLNRFGTI EICISTKIDP SAVSWTTFLR IDMTLINGLP DNFFVHSYAT SFFFDEEKKV
301: AVLFGTNRYR GRETCQYYQR ACIVGDSGYF KAVNIELVFN SQLQSCQLVS SSYVPSLVQL QD

Arabidopsis Description

F-box protein At1g54550 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.