Factsheet for Bra004262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56208	Canola	nucleus	98.98	98.48
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	42.39	46.78
Bra017247.1-P	Field mustard	mitochondrion	32.99	38.01
Bra024829.1-P	Field mustard	cytosol	37.31	36.21
Bra001764.1-P	Field mustard	cytosol	36.55	36.18
Bra022464.1-P	Field mustard	cytosol	34.77	35.96
Bra017242.1-P	Field mustard	cytosol	35.28	35.82
Bra020991.1-P	Field mustard	cytosol	35.28	34.66
Bra001800.1-P	Field mustard	cytosol	35.28	34.41
Bra001803.1-P	Field mustard	cytosol	31.98	33.78
Bra021512.1-P	Field mustard	plastid	33.25	33.42
Bra017228.1-P	Field mustard	cytosol	21.57	33.33
Bra002578.1-P	Field mustard	cytosol	31.22	33.06
Bra018376.1-P	Field mustard	cytosol	19.54	33.05
Bra041044.1-P	Field mustard	cytosol	27.41	33.03
Bra024830.1-P	Field mustard	nucleus, plastid	36.8	32.81
Bra041045.1-P	Field mustard	nucleus	31.22	32.45
Bra033383.1-P	Field mustard	cytosol	31.73	32.38
Bra017069.1-P	Field mustard	cytosol	30.2	30.91
Bra013348.1-P	Field mustard	cytosol	28.43	30.11
Bra029507.1-P	Field mustard	cytosol	29.19	29.04
Bra021823.1-P	Field mustard	cytosol	26.65	28.85
Bra021825.1-P	Field mustard	cytosol	21.07	27.85

Protein Annotations

EnsemblPlants:Bra004262.1	EnsemblPlants:Bra004262.1-P	EnsemblPlantsGene:Bra004262	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:Gal_Oxase/kelch_b-propeller
PANTHER:PTHR44355	PANTHER:PTHR44355:SF1	PFAM:PF07734	SUPFAM:SSF50965	TIGRFAMs:TIGR01640	UniParc:UPI00025416C9
UniProt:M4CJ78	MapMan:35.1	:	:	:	:

Description

AT3G13680 (E=2e-063) | F-box family protein

Coordinates

chrA07:-:17702308..17703492

Molecular Weight (calculated)

45322.6 Da

IEP (calculated)

6.722

GRAVY (calculated)

-0.386

Length

394 amino acids

Sequence
(BLAST)

001: MMSDHGGRKV WGKTKRNRED LEENPNIPIA ARVGRMMKKV SITSEEEEAV GPQQQFLTMN GKVYSLRYQD EFVDASVKEV DLLNELEVSK LYHCDGLVLC
101: VAKDNSELVL WNPYLCQTRW IGPRESFHLS DRHAVGYDEG RNHKILRFWD NFIRNMKRIE VVYEIYEIRS NSWRVLEEVN HEGLIDTHQR GVSVKGNTYF
201: VANHYGLAHK VSLICFDFTK ERFGPRLPLP FDSFDGFNGD LVTLSSFFRG GGDDEQLAVL FGGYESGFFE FWVTLTVHPN RASWSKFLRM EPGPFSGYGF
301: KLYSSFSGGS FFVDEENKFA VLFELYGSRT VHAAFVFGQD GFFKSSFNLG QALILEHHHH KAARPPLVCS YRPSFVQVKE NERLVSSSDQ QTHV

Best Arabidopsis Sequence Match ( AT1G24800.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.