Factsheet for Bra017247.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	44.44	78.35
Bra041044.1-P	Field mustard	cytosol	60.53	63.3
Bra017228.1-P	Field mustard	cytosol	43.86	58.82
Bra041045.1-P	Field mustard	nucleus	64.62	58.31
Bra017242.1-P	Field mustard	cytosol	65.79	57.99
AT3G13680.1	Thale cress	cytosol	51.17	44.3
Bra021512.1-P	Field mustard	plastid	44.15	38.52
Bra018376.1-P	Field mustard	cytosol	24.85	36.48
Bra024829.1-P	Field mustard	cytosol	41.52	34.98
Bra001803.1-P	Field mustard	cytosol	37.72	34.58
Bra002578.1-P	Field mustard	cytosol	37.43	34.41
Bra022464.1-P	Field mustard	cytosol	38.01	34.12
Bra020991.1-P	Field mustard	cytosol	39.77	33.92
Bra001764.1-P	Field mustard	cytosol	38.89	33.42
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	38.01	32.99
Bra033383.1-P	Field mustard	cytosol	37.13	32.9
Bra001800.1-P	Field mustard	cytosol	38.01	32.18
Bra017069.1-P	Field mustard	cytosol	35.67	31.69
Bra024830.1-P	Field mustard	nucleus, plastid	40.94	31.67
Bra035173.1-P	Field mustard	cytosol, extracellular, mitochondrion, nucleus	32.16	30.81
Bra013348.1-P	Field mustard	cytosol	33.33	30.65
Bra029507.1-P	Field mustard	cytosol	35.38	30.56
Bra021825.1-P	Field mustard	cytosol	26.61	30.54
Bra021823.1-P	Field mustard	cytosol	30.99	29.12

Protein Annotations

EnsemblPlants:Bra017247.1	EnsemblPlants:Bra017247.1-P	EnsemblPlantsGene:Bra017247	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:Gal_Oxase/kelch_b-propeller
PANTHER:PTHR31790	PFAM:PF07734	SEG:seg	SUPFAM:SSF50965	TIGRFAMs:TIGR01640	UniParc:UPI0002544063
UniProt:M4DL66	MapMan:35.1	:	:	:	:

Description

AT4G17200 (E=2e-055) | F-box family protein

Coordinates

chrA04:-:15759220..15760248

Molecular Weight (calculated)

38979.7 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.138

Length

342 amino acids

Sequence
(BLAST)

001: MRYSPGCQKW NTSCKNRIFL GKEAAAKKQF LMMNSSRISL MNLDLPKDDG SPSIEQVSVL DQIQISEVFH CDGLLLCVLE DSSRPLLVWN PYLGQTRWIE
101: PRHCGFHSSD RFALGYDKIL RISNEIHPIT TEHVLGYDFT SSSWKVLDGV PPERQIGSYS RGVALKGNTY FRASVVGSVL CFDFTAESFG PLLPLPLPPF
201: HSYHGLHFLS FSCVREEDQL AVLYQHWNAR ETIEISVTDK IGPEVVSWTK FLKAVTGYWV DPTAGSFLVD EEKKIAVVFV LERLSFGCLH QTAHVFGQDG
301: YFKSVRIREA PYLWNDFYPH KRYYPPLCCS SYLPSLLQLQ ST

Best Arabidopsis Sequence Match ( AT3G13680.1 )
(BLAST)

001: MTTMGDLPGD LVEEILSRVP LTSLRAIRST CQKWNSLSKS QICGRKATAA ENKFLGFMMK DSRVCSMKFD LQGIRNDDGE LVEPSIKQVS KLDQIEVSQV
101: FHCDGLVLCI IKDNTGLLVW NPYLGQTRWI HPRNNYQIED RYALGYDNNR NHKILRIFDL YPSSNRVFGY EVYDFSSNSW KVLDVIPEWD IQSHFRGASL
201: KGNAYFPAQK KETVGGIKTI NIEDVLLCFD FTRERFGPPL PLPFHSYNAD FFVSLACVRE EQLAVLYQRW GAFETIEICV TNKIDPNTVS WSKFLITSTG
301: FPVDTFSGSF FIDEEKKVAV VFDLDRYKPT ETCRYQIVYI IGQDEYFKSV NMGVAPNIAK NSYQAYCVPL VCSSSYVPSL VQLQINKPGK RKESN

Arabidopsis Description

F-box/kelch-repeat protein At3g13680 [Source:UniProtKB/Swiss-Prot;Acc:Q9LID1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.