Factsheet for Bra035173.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	100.0	100.0
Bra004262.1-P	Field mustard	cytosol, nucleus, peroxisome	46.78	42.39
Bra024829.1-P	Field mustard	cytosol	41.46	36.45
Bra020991.1-P	Field mustard	cytosol	40.62	36.16
Bra017242.1-P	Field mustard	cytosol	39.22	36.08
Bra022464.1-P	Field mustard	cytosol	37.53	35.17
Bra001803.1-P	Field mustard	cytosol	36.41	34.85
Bra021512.1-P	Field mustard	plastid	38.1	34.69
Bra001764.1-P	Field mustard	cytosol	38.66	34.67
Bra041044.1-P	Field mustard	cytosol	31.09	33.95
Bra013348.1-P	Field mustard	cytosol	35.29	33.87
Bra001800.1-P	Field mustard	cytosol	37.25	32.92
Bra017247.1-P	Field mustard	mitochondrion	30.81	32.16
Bra002578.1-P	Field mustard	cytosol	32.77	31.45
Bra024830.1-P	Field mustard	nucleus, plastid	38.94	31.45
Bra041045.1-P	Field mustard	nucleus	33.33	31.4
Bra033383.1-P	Field mustard	cytosol	33.61	31.09
Bra017069.1-P	Field mustard	cytosol	33.05	30.65
Bra029507.1-P	Field mustard	cytosol	32.21	29.04
Bra017228.1-P	Field mustard	cytosol	20.45	28.63
Bra021823.1-P	Field mustard	cytosol	26.05	25.55
Bra021825.1-P	Field mustard	cytosol	21.01	25.17
Bra018376.1-P	Field mustard	cytosol	15.41	23.61

Protein Annotations

EnsemblPlants:Bra035173.1	EnsemblPlants:Bra035173.1-P	EnsemblPlantsGene:Bra035173	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810
PANTHER:PTHR44355	PFAM:PF00646	PFAM:PF07734	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0002541E35
UniProt:M4F276	MapMan:35.1	:	:	:	:

Description

AT1G24881 (E=1e-043) | CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), F-box associated (InterPro:IPR006527), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25211.1); Has 745 Blast hits to 722 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 743; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA07:+:22448100..22452326

Molecular Weight (calculated)

40192.2 Da

IEP (calculated)

6.832

GRAVY (calculated)

-0.022

Length

357 amino acids

Sequence
(BLAST)

001: MMPRMIDLPQ KLVVEIFKRV PITSLKAVRS TCKTWEAITK SWVVLGAAAR HEFLLGFVKM NNKVYSLRYH HQGDVSVQQV DLPNQLEISS MVYHCDGLLL
101: CVAKDLSKLL VWNPYLCQSR WIGPRGESFN ASDMYAIGYS EDKNKKRDHK ILRFVDDSCV VGPVISVFRC EIYEMSSSDS SWRVLEEGKP EWEIDVHQRG
201: ASVNDCVTLS SFLRGDDEQL AALFGGCESS FFEIWVTLSV EPKYVSWTKF LVVETGGPIF TSLNFQLSTY FGGSFFVDEE NKVAVVFERD SYISISAPPP
301: SQHTAFVFGQ AGYIHSVNLG QALKLQHLSP YSGKHCQALL PPLVCSSSFR PTLVQVS

Best Arabidopsis Sequence Match ( AT1G24800.1 )
(BLAST)

001: MRRRRCDLQP KRTRMCDLQP KRTSMCDLPP KLVGEKILTR IPITSLRAVR STCKLWNALT KDRVLGKAAA QFLGFMTMDS KVCSVRFHLR RSKEEEEDTM
101: DLSIKQVDLL NQVEISRVYH CDGLLLCVAK DNSRVVVWNP YLGQTRWIRP RTESNIGDSY ALGYDINRNH KILRMVQTRN VSVYRYEIYD LRSNSWRVLE
201: VTPNGEMDPN HPLYGVSVKG NTYFFAHEDS SSGEIDEDGD IIDLEDFLLC FDFTTETFGL RLPLPFHSTI DATVTLSCVR DQQLAVLYHN EGLHSDDRFT
301: TVEFWVTTSI EPNSVSWSKF LTVDMRPLAL TGVRFDNDMG ATFFIDEDEK VAVVFDLDGY LSTESARYHT AFISGKDGFF KPVTLGVAPN VGEPCPRTGH
401: IPTTYRPPLV CSSTYLPSLV QVNQQRKRKE RHV

Arabidopsis Description

F-box/kelch-repeat protein At1g25211 [Source:UniProtKB/Swiss-Prot;Acc:P0DI06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.