CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002578.1-P	Field mustard	cytosol	96.86	99.46
CDY71800	Canola	cytosol	93.72	94.21
CDX80282	Canola	cytosol	92.41	91.21
CDY07015	Canola	cytosol	80.1	79.48
CDX93257	Canola	cytosol	78.27	76.86
CDX78893	Canola	cytosol	19.9	46.91
AT4G17200.1	Thale cress	cytosol	46.07	46.19
CDX82230	Canola	cytosol	48.17	45.54
CDX82277	Canola	cytosol	46.86	44.97
CDY70218	Canola	plastid	9.16	44.87
CDY69763	Canola	cytosol	29.84	44.71
CDY25355	Canola	cytosol	42.15	43.4
CDX99431	Canola	cytosol	22.25	42.5
CDY22955	Canola	cytosol	21.99	42.42
CDY37492	Canola	cytosol	24.08	42.4
CDY33422	Canola	cytosol	46.34	41.75
CDY45455	Canola	cytosol	11.52	41.51
CDY43730	Canola	cytosol	27.49	41.34
CDY43731	Canola	cytosol	18.85	41.14
CDY17608	Canola	cytosol	43.46	40.89
CDY43729	Canola	cytosol	40.84	40.62
CDY03068	Canola	nucleus	43.19	40.54
CDY37477	Canola	nucleus	19.37	39.57
CDY67602	Canola	cytosol	37.43	39.5
CDY19516	Canola	cytosol	35.6	38.64
CDY32394	Canola	cytosol	38.48	38.48
CDY03069	Canola	plastid	44.76	38.34
CDY43733	Canola	cytosol	32.46	38.15
CDY37491	Canola	cytosol	9.69	38.14
CDY71567	Canola	cytosol	40.05	38.06
CDY17609	Canola	plastid	43.72	37.7
CDY67601	Canola	cytosol	37.7	37.7
CDY32393	Canola	mitochondrion	23.04	37.61
CDX82226	Canola	cytosol	25.65	37.26
CDY62603	Canola	cytosol	36.65	36.84
CDX78894	Canola	cytosol	35.86	36.83
CDX84915	Canola	cytosol	31.94	36.31
CDX94566	Canola	cytosol	20.42	35.94
CDY70219	Canola	cytosol	16.49	35.39
CDY23772	Canola	cytosol	24.61	35.34
CDY69271	Canola	cytosol	33.25	34.89
CDY43734	Canola	mitochondrion, nucleus, plastid, vacuole	17.28	34.02
CDY40874	Canola	mitochondrion	32.98	33.6
CDX87320	Canola	cytosol, extracellular, mitochondrion, nucleus	31.15	33.33
CDY45456	Canola	cytosol	20.42	33.19
CDY01863	Canola	cytosol	21.47	32.93
CDY56208	Canola	nucleus	33.25	32.07
CDY67865	Canola	cytosol	41.1	31.78
CDY37490	Canola	mitochondrion	13.87	31.55
CDX72756	Canola	cytosol	34.29	31.34
CDY65844	Canola	extracellular	21.2	30.34
CDY57669	Canola	cytosol	29.06	28.1
CDY70726	Canola	cytosol	15.97	27.48
CDY68693	Canola	cytosol	31.94	25.36

Protein Annotations

EnsemblPlants:CDY33027	EnsemblPlantsGene:GSBRNA2T00053255001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-assoc_dom_typ1
InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR31790	PFAM:PF00646
PFAM:PF07734	ProteinID:CDY33027	ProteinID:CDY33027.1	SEG:seg	SUPFAM:SSF81383	TIGRFAMs:TIGR01640
UniParc:UPI0004EF0AFC	UniProt:A0A078H6L3	MapMan:35.1	:	:	:

Description

BnaA10g12330DBnaA10g12330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6L3]

Coordinates

chrLK032304:+:316229..317377

Molecular Weight (calculated)

44076.1 Da

IEP (calculated)

5.076

GRAVY (calculated)

-0.114

Length

382 amino acids

Sequence
(BLAST)

001: MTTISDLSRY LIGEILSKVP ITCVGKVRCT CKRWNASSRH RIFGKAVARQ FMGFMMIDFK VCSVRIDLNG IVKDEEGSGP VSIKPIDKLN EIEISKVFHC
101: DGLLLCTTRD NTRLLVWNPY LGQMKWIEPK TAYHRLDRYA LGYDTNKKSY KILRFVDDAY WPTSLFEFEI YDMNSNLWRA LDVTPDWDIE FFRPGLTVKG
201: NTYFFAKQKI ILDEGEADGD VDDFLVSFDF TKERFGPHLH VPFHSRLDED TVVLSSVGEE KLAALYQCMD RNMMEIWVTT KIEPHAVSWS KLYFLAVDKM
301: VPLLSGSFFI DEEKKLALAF TLDTLGRYKR AYIIGEDEYF KQVDLGEAVV IPDDDDDYPY CFPLVCSYVP SLVQINQGLI LS

Best Arabidopsis Sequence Match ( AT4G17200.1 )
(BLAST)

001: MTTMSDLSPD LVGEILTRVP MTSLISVRCT CKMWNALSKE GIFFKAARKQ FMGFTMMDSR VCSMKFDLQG IRNNEHDFVD PCIKQIAKLD QIEVSKVLQC
101: DGLLLCVGKD NSRLLVWNPY LGQTRFIKPR KRFNKLEWYA LGYDNNHNYK ILMNYDTGHL FGYEIYDFSS DSWRVLDVSP DCHIPFHQQS VSLNGNTYFL
201: AQEKIIVEGE EEEVVDEIEK FLLCFDFTTE RFGPRLPLPF HSDVLETVAI SCVRDDQLAV LYQRFETWEI WVTTKIDPTA VSWSMFLSVD MEPPTGCQFD
301: DEAGSFFIDE ENKVAVFFNS DLFNPRVENR NRRYPTAYII GQDGYFKSAT LREAPDLVKP DPYVYCCPLV WSSYAPSLVQ L

Arabidopsis Description

Putative F-box protein At4g17200 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0M7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.