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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY70407 Canola peroxisome 68.95 81.84
CDX67607 Canola peroxisome 78.08 81.43
CDX78259 Canola nucleus 75.11 81.03
Bra007093.1-P Field mustard nucleus 74.89 80.79
CDX73453 Canola nucleus 76.03 80.43
Bra014792.1-P Field mustard cytosol 72.15 79.4
CDX76130 Canola cytosol 71.92 79.15
CDY02887 Canola cytosol, nucleus, peroxisome 66.67 77.04
AT5G06560.1 Thale cress nucleus 47.72 40.35
AT3G11850.2 Thale cress nucleus 40.18 34.92
AT2G24140.2 Thale cress nucleus 14.16 19.14
AT5G57830.1 Thale cress nucleus 16.89 19.12
AT4G30830.1 Thale cress nucleus 14.84 17.91
AT4G13160.1 Thale cress endoplasmic reticulum 10.73 16.67
AT1G04890.1 Thale cress mitochondrion 15.53 16.55
AT4G13630.1 Thale cress extracellular, golgi 16.67 12.83
AT1G18990.1 Thale cress endoplasmic reticulum, plasma membrane 14.38 12.02
AT1G74830.1 Thale cress extracellular, golgi, vacuole 13.47 10.89
AT5G16720.1 Thale cress endoplasmic reticulum, golgi, vacuole 16.67 10.81
AT1G70750.1 Thale cress endoplasmic reticulum, golgi, mitochondrion 18.49 10.81
AT2G30690.2 Thale cress endoplasmic reticulum, plasma membrane, plastid 11.64 6.71
AT1G08800.1 Thale cress extracellular, vacuole 14.38 5.66
Protein Annotations
MapMan:35.1EntrezGene:824639ProteinID:AEE79276.1ProteinID:ANM63594.1ProteinID:ANM63595.1ProteinID:ANM63597.1
ArrayExpress:AT3G54740EnsemblPlantsGene:AT3G54740RefSeq:AT3G54740TAIR:AT3G54740RefSeq:AT3G54740-TAIR-GEnsemblPlants:AT3G54740.3
Unigene:At.28025ProteinID:CAB77594.1ncoils:CoilInterPro:GTD-bdInterPro:IPR007656RefSeq:NP_001078285.1
RefSeq:NP_001319751.1RefSeq:NP_001325670.1RefSeq:NP_001325671.1PFAM:PF04576PFscan:PS51775PANTHER:PTHR31422
PANTHER:PTHR31422:SF0UniProt:Q9M1S6UniParc:UPI00000A9210SEG:seg::
Description
Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
Coordinates
chr3:+:20262175..20264686
Molecular Weight (calculated)
49475.4 Da
IEP (calculated)
5.100
GRAVY (calculated)
-0.542
Length
438 amino acids
Sequence
(BLAST)
001: MDSELSFSSR DVVNCCEYGC DYSLGACSSD PLARTVKRKF NEFKEGNNMM LLRGSSDSSS SNAKILVENE CAALLEALSS QRETVKDLHL ELEEERNAAA
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.