Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034886.1-P | Field mustard | cytosol | 34.75 | 76.56 |
| CDY47332 | Canola | extracellular, plasma membrane | 67.02 | 72.41 |
| CDY01114 | Canola | extracellular, plasma membrane | 65.96 | 71.26 |
| Bra032692.1-P | Field mustard | extracellular, plasma membrane | 65.96 | 71.26 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 39.36 | 19.51 |
| KRH07498 | Soybean | endoplasmic reticulum, plasma membrane | 42.55 | 18.4 |
| KRH66087 | Soybean | endoplasmic reticulum, plasma membrane | 42.2 | 18.36 |
| TraesCS2D01G272500.1 | Wheat | plastid | 29.43 | 17.11 |
| TraesCS2A01G273300.1 | Wheat | plastid | 29.43 | 17.11 |
| PGSC0003DMT400011603 | Potato | nucleus | 30.85 | 17.06 |
| TraesCS2B01G291300.1 | Wheat | plastid | 29.08 | 16.91 |
| Zm00001d032786_P001 | Maize | plastid | 24.47 | 16.79 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 17.73 | 16.72 |
| Solyc12g098380.1.1 | Tomato | extracellular, plasma membrane, vacuole | 43.26 | 16.38 |
| AT1G04890.1 | Thale cress | mitochondrion | 22.7 | 15.57 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 32.98 | 15.22 |
| Zm00001d014088_P001 | Maize | plastid | 26.24 | 14.95 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 23.76 | 13.96 |
| AT2G24140.2 | Thale cress | nucleus | 15.6 | 13.58 |
| AT4G30830.1 | Thale cress | nucleus | 15.6 | 12.12 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 18.79 | 11.96 |
| AT1G18990.1 | Thale cress | endoplasmic reticulum, plasma membrane | 21.63 | 11.64 |
| AT1G74830.1 | Thale cress | extracellular, golgi, vacuole | 21.28 | 11.07 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 16.67 | 10.73 |
| AT5G57830.1 | Thale cress | nucleus | 13.83 | 10.08 |
| AT5G06560.1 | Thale cress | nucleus | 18.44 | 10.04 |
| AT3G11850.2 | Thale cress | nucleus | 16.31 | 9.13 |
| AT5G16720.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 19.5 | 8.15 |
| AT1G70750.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion | 18.79 | 7.08 |
| AT2G30690.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 18.09 | 6.71 |
| AT1G08800.1 | Thale cress | extracellular, vacuole | 17.73 | 4.49 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826930 | ProteinID:AEE83239.1 | EMBL:AK229003 | ArrayExpress:AT4G13160 | EnsemblPlantsGene:AT4G13160 |
| RefSeq:AT4G13160 | TAIR:AT4G13160 | RefSeq:AT4G13160-TAIR-G | EnsemblPlants:AT4G13160.1 | TAIR:AT4G13160.1 | Unigene:At.33409 |
| EMBL:BT011218 | EMBL:BT012149 | ProteinID:CAB41926.1 | ProteinID:CAB78358.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004674 | GO:GO:0005575 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0046777 | InterPro:GTD-bd | InterPro:IPR007656 | RefSeq:NP_193052.1 | PFAM:PF04576 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51775 | PANTHER:PTHR31422 | PANTHER:PTHR31422:SF3 |
| UniProt:Q9SVR1 | TMHMM:TMhelix | UniParc:UPI00000A7086 | SEG:seg | : | : |
Description
At4g13160 [Source:UniProtKB/TrEMBL;Acc:Q9SVR1]
Coordinates
chr4:+:7653594..7654969
Molecular Weight (calculated)
33068.1 Da
IEP (calculated)
4.297
GRAVY (calculated)
-0.606
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYQESYRLT FYGILVAFME LAFAYCLLCV SAFVFITSKL LLFMPCIGYQ NSDLCIQKLL FDWPFRIILR VQKLATTNRP SVLHHQEQEQ EQEQEQEEKT
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.