Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76832 | Canola | nucleus | 69.14 | 69.57 |
| CDY34794 | Canola | nucleus | 69.44 | 69.02 |
| Bra039233.1-P | Field mustard | nucleus | 68.52 | 68.1 |
| AT4G30830.1 | Thale cress | nucleus | 55.86 | 49.86 |
| AT5G57830.1 | Thale cress | nucleus | 31.79 | 26.61 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 38.27 | 26.44 |
| KRH55008 | Soybean | cytosol | 12.96 | 26.09 |
| KRH63109 | Soybean | nucleus | 33.33 | 23.43 |
| KRH12784 | Soybean | nucleus | 32.1 | 22.81 |
| KRH37764 | Soybean | nucleus | 31.79 | 22.49 |
| KRH72337 | Soybean | nucleus | 31.79 | 21.96 |
| KRH03013 | Soybean | nucleus | 31.17 | 21.31 |
| PGSC0003DMT400028965 | Potato | nucleus | 28.7 | 20.53 |
| Solyc07g005910.2.1 | Tomato | nucleus | 28.4 | 20.31 |
| PGSC0003DMT400023950 | Potato | nucleus | 27.78 | 20.22 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 15.74 | 17.59 |
| Solyc11g020850.1.1 | Tomato | nucleus | 28.4 | 17.52 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 20.06 | 17.24 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 20.06 | 17.15 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 19.75 | 16.89 |
| Zm00001d024102_P002 | Maize | nucleus | 17.59 | 16.1 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 13.58 | 15.6 |
| OQU80230 | Sorghum | cytosol | 18.83 | 15.25 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 20.37 | 15.14 |
| Os08t0442350-01 | Rice | nucleus | 23.15 | 15.06 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 20.37 | 14.9 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 20.37 | 14.9 |
| GSMUA_Achr10P... | Banana | nucleus | 21.6 | 14.52 |
| OQU80548 | Sorghum | nucleus | 23.46 | 14.39 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 18.83 | 14.25 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 19.14 | 14.16 |
| AT1G04890.1 | Thale cress | mitochondrion | 16.98 | 13.38 |
| AT5G06560.1 | Thale cress | nucleus | 20.99 | 13.13 |
| Solyc12g009900.1.1 | Tomato | cytosol | 21.91 | 11.15 |
| Zm00001d032145_P001 | Maize | nucleus | 20.37 | 10.66 |
| AT3G11850.2 | Thale cress | nucleus | 16.36 | 10.52 |
| PGSC0003DMT400020469 | Potato | cytosol | 22.22 | 10.37 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 15.74 | 8.96 |
| AT1G74830.1 | Thale cress | extracellular, golgi, vacuole | 14.51 | 8.67 |
| AT1G70750.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion | 18.52 | 8.01 |
| AT1G18990.1 | Thale cress | endoplasmic reticulum, plasma membrane | 12.35 | 7.63 |
| AT5G16720.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 14.81 | 7.11 |
| CDY31127 | Canola | cytosol | 14.2 | 7.08 |
| AT2G30690.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 13.27 | 5.66 |
| AT1G08800.1 | Thale cress | extracellular, vacuole | 13.89 | 4.04 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.31 | 0.51 |
Protein Annotations
| ArrayExpress:AT2G24140 | EnsemblPlants:AT2G24140.2 | EnsemblPlantsGene:AT2G24140 | EntrezGene:816948 | InterPro:GTD-bd | InterPro:IPR007656 |
| ncoils:Coil | PANTHER:PTHR31422 | PANTHER:PTHR31422:SF1 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:ANM62156.1 |
| ProteinID:ANM62157.1 | RefSeq:AT2G24140 | RefSeq:AT2G24140-TAIR-G | RefSeq:NP_001324334.1 | RefSeq:NP_001324335.1 | SEG:seg |
| TAIR:AT2G24140 | Unigene:At.39200 | UniParc:UPI0008489BF9 | UniProt:A0A1P8AZT2 | MapMan:35.2 | : |
Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT2G24140]
Coordinates
chr2:-:10262478..10264065
Molecular Weight (calculated)
37592.5 Da
IEP (calculated)
4.688
GRAVY (calculated)
-0.829
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRSYSLET RGFESTTDLR IALYEMKEDV QRLEEELDAE REATATSASE AMSVILRLQG EKALLAMEAS QYKRMVEERM SHVELSMELL EDLNYQKEVE
101: IKNLECDLHA YRCKLMSLGW SGLDDEDCIR FCDRSQTPSP EPNETVLVEK GVIEQSLDSR RDHEKNLDLN WEKIKKVDEQ LKELTDFRDS VRDQYKILKQ
201: ETTSVSETKN GEKGMCKPDL LVKKMSKKSL KQKRDKSIKR DQALGSCSAN DAEYQAELQR LRERVERLEQ ERCNKEPAQT SGVSQENMNL QRKSEEELSS
301: MQSAMFSYDS AIVSVQEAML YFWL
101: IKNLECDLHA YRCKLMSLGW SGLDDEDCIR FCDRSQTPSP EPNETVLVEK GVIEQSLDSR RDHEKNLDLN WEKIKKVDEQ LKELTDFRDS VRDQYKILKQ
201: ETTSVSETKN GEKGMCKPDL LVKKMSKKSL KQKRDKSIKR DQALGSCSAN DAEYQAELQR LRERVERLEQ ERCNKEPAQT SGVSQENMNL QRKSEEELSS
301: MQSAMFSYDS AIVSVQEAML YFWL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.