Factsheet for Bra039233.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G24140.2	Thale cress	nucleus	68.1	68.52
Bra011226.1-P	Field mustard	cytosol	47.24	46.81
Bra006798.1-P	Field mustard	nucleus	29.45	31.37
Bra034886.1-P	Field mustard	cytosol	11.96	30.47
Bra002693.1-P	Field mustard	nucleus	31.6	27.99
Bra006800.1-P	Field mustard	cytosol	13.8	27.78
Bra002694.1-P	Field mustard	nucleus	31.29	27.72
Bra020409.1-P	Field mustard	nucleus	25.46	26.1
VIT_11s0037g00610.t01	Wine grape	nucleus	37.42	26.01
KRH55008	Soybean	cytosol	12.58	25.47
KRH72337	Soybean	nucleus	34.97	24.31
KRH03013	Soybean	nucleus	35.28	24.26
KRH12784	Soybean	nucleus	33.13	23.68
KRH37764	Soybean	nucleus	33.13	23.58
KRH63109	Soybean	nucleus	33.13	23.43
PGSC0003DMT400023950	Potato	nucleus	30.37	22.25
Solyc07g005910.2.1	Tomato	nucleus	30.37	21.85
PGSC0003DMT400028965	Potato	nucleus	30.06	21.63
Os08t0269000-01	Rice	cytosol, golgi, nucleus	17.79	20.0
Solyc11g020850.1.1	Tomato	nucleus	30.98	19.24
TraesCS5B01G405000.1	Wheat	nucleus	20.25	17.51
TraesCS5A01G400200.1	Wheat	nucleus	19.94	17.15
TraesCS5D01G410200.1	Wheat	nucleus	19.94	17.15
Zm00001d024102_P002	Maize	nucleus	18.4	16.95
Bra032692.1-P	Field mustard	extracellular, plasma membrane	13.19	16.48
TraesCS7D01G282800.1	Wheat	nucleus	21.78	16.28
Os08t0442350-01	Rice	nucleus	24.85	16.27
TraesCS7A01G285400.1	Wheat	nucleus	22.09	16.25
TraesCS7B01G199800.1	Wheat	nucleus	22.09	16.25
OQU80230	Sorghum	cytosol	19.33	15.75
HORVU5Hr1G097200.5	Barley	cytosol	20.25	15.42
Bra014792.1-P	Field mustard	cytosol	18.71	15.33
Bra007093.1-P	Field mustard	nucleus	19.02	15.27
Bra028728.1-P	Field mustard	nucleus	19.02	15.23
GSMUA_Achr10P...	Banana	nucleus	22.39	15.15
OQU80548	Sorghum	nucleus	24.23	14.96
Bra034805.1-P	Field mustard	nucleus	19.94	14.54
Bra009206.1-P	Field mustard	nucleus	19.02	14.52
Bra038684.1-P	Field mustard	nucleus	16.56	13.4
Solyc12g009900.1.1	Tomato	cytosol	23.01	11.77
Zm00001d032145_P001	Maize	nucleus	21.47	11.31
PGSC0003DMT400020469	Potato	cytosol	23.01	10.81
Bra003783.1-P	Field mustard	extracellular, plasma membrane	14.11	9.7
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	15.34	9.58
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	15.95	9.42
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	14.42	8.66
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	13.5	8.49
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	13.19	8.41
Bra008601.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	16.56	7.83
Bra018297.1-P	Field mustard	endoplasmic reticulum, extracellular	15.03	7.15
CDY31127	Canola	cytosol	14.11	7.08
Bra016190.1-P	Field mustard	mitochondrion	18.71	7.0
Bra021657.1-P	Field mustard	endoplasmic reticulum	14.72	6.47
Bra018599.1-P	Field mustard	extracellular, vacuole	13.8	4.7
Bra030742.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid, vacuole	14.11	3.99
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:Bra039233.1	EnsemblPlants:Bra039233.1-P	EnsemblPlantsGene:Bra039233	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775	SEG:seg	UniParc:UPI0002542DED
UniProt:M4FDR2	MapMan:35.2	:	:	:	:

Description

AT2G24140 (E=6e-059) | unknown protein

Coordinates

chrA09:+:31352249..31353229

Molecular Weight (calculated)

37593.4 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.764

Length

326 amino acids

Sequence
(BLAST)

001: MVGRSYSLNM RGVESQDLRI ALYEMKEDVQ RLQEELDAER EATATSASEA MSMILRLQGE KAALVMEASQ YRRMVEERMS HAELSLELLE DLNYQKEDEI
101: KNLESRLYAY KCKLLSLGCK GTDDDRSFSD MRWCDRSQTP SPEPVDTDVL VPVEKEVIEQ SLDSSRKHQE KNLDLCWDQI KKLDEQLKEL TDSIKMETFS
201: VSETKNGEIS EAFAASSSNI QDMVPKVCKK SSKRKRKRSV KRDHVQGGFS ENDAEYQAEL QRLRERVEQL ERARCTAEPQ TSEVKQEEEL SVVQAEMKDS
301: RTTVELLPCY DSAIVSVQEV WLHQLL

Best Arabidopsis Sequence Match ( AT2G24140.2 )
(BLAST)

001: MVGRSYSLET RGFESTTDLR IALYEMKEDV QRLEEELDAE REATATSASE AMSVILRLQG EKALLAMEAS QYKRMVEERM SHVELSMELL EDLNYQKEVE
101: IKNLECDLHA YRCKLMSLGW SGLDDEDCIR FCDRSQTPSP EPNETVLVEK GVIEQSLDSR RDHEKNLDLN WEKIKKVDEQ LKELTDFRDS VRDQYKILKQ
201: ETTSVSETKN GEKGMCKPDL LVKKMSKKSL KQKRDKSIKR DQALGSCSAN DAEYQAELQR LRERVERLEQ ERCNKEPAQT SGVSQENMNL QRKSEEELSS
301: MQSAMFSYDS AIVSVQEAML YFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT2G24140]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.