CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032145_P001	Maize	nucleus	75.19	64.14
TraesCS7D01G282800.1	Wheat	nucleus	49.24	59.63
TraesCS7B01G199800.1	Wheat	nucleus	49.05	58.47
TraesCS7A01G285400.1	Wheat	nucleus	48.67	58.01
Os08t0442350-01	Rice	nucleus	52.27	55.42
KRH72337	Soybean	nucleus	23.3	26.23
KRH03013	Soybean	nucleus	23.11	25.74
CDX68698	Canola	cytosol	14.2	25.51
CDX88641	Canola	nucleus	5.87	25.41
Bra006798.1-P	Field mustard	nucleus	14.58	25.16
Bra020409.1-P	Field mustard	nucleus	15.15	25.16
KRH55008	Soybean	cytosol	7.58	24.84
CDX76832	Canola	nucleus	15.15	24.84
Bra002694.1-P	Field mustard	nucleus	17.23	24.73
CDY51277	Canola	nucleus	17.23	24.73
Bra002693.1-P	Field mustard	nucleus	17.23	24.73
CDY34794	Canola	nucleus	15.15	24.54
CDY28219	Canola	cytosol	13.64	24.49
CDY02772	Canola	nucleus	16.86	24.32
CDY32744	Canola	nucleus	16.86	24.32
Bra039233.1-P	Field mustard	nucleus	14.96	24.23
CDY50792	Canola	nucleus	16.86	24.18
AT4G30830.1	Thale cress	nucleus	16.48	23.97
KRH63109	Soybean	nucleus	20.64	23.64
KRH37764	Soybean	nucleus	20.45	23.58
AT2G24140.2	Thale cress	nucleus	14.39	23.46
AT5G57830.1	Thale cress	nucleus	17.05	23.26
KRH12784	Soybean	nucleus	20.08	23.25
VIT_11s0037g00610.t01	Wine grape	nucleus	20.27	22.81
Bra011226.1-P	Field mustard	cytosol	14.2	22.8
CDX88643	Canola	nucleus	10.04	22.27
Bra006800.1-P	Field mustard	cytosol	6.63	21.6
CDY11846	Canola	nucleus	9.66	21.43
PGSC0003DMT400023950	Potato	nucleus	17.99	21.35
CDX72271	Canola	nucleus	15.53	21.24
Solyc07g005910.2.1	Tomato	nucleus	17.8	20.75
PGSC0003DMT400028965	Potato	nucleus	17.61	20.53
GSMUA_Achr10P...	Banana	nucleus	18.56	20.33
CDY13389	Canola	nucleus	14.96	19.65
OQU80230	Sorghum	cytosol	14.58	19.25
Solyc11g020850.1.1	Tomato	nucleus	17.23	17.33
KXG28744	Sorghum	cytosol	11.36	13.24
OQU91677	Sorghum	endoplasmic reticulum, golgi	11.17	12.29
Solyc12g009900.1.1	Tomato	cytosol	14.77	12.24
OQU91257	Sorghum	nucleus	10.98	11.35
PGSC0003DMT400020469	Potato	cytosol	14.2	10.81
OQU79118	Sorghum	plastid	4.17	9.05
KXG38537	Sorghum	golgi, plasma membrane, plastid	9.47	8.9
EER92810	Sorghum	mitochondrion	12.12	8.1
EER93280	Sorghum	golgi, vacuole	9.47	6.96
EER95149	Sorghum	mitochondrion	11.17	6.77
CDY31127	Canola	cytosol	8.14	6.62
EES01549	Sorghum	golgi	10.23	5.96
OQU91120	Sorghum	endoplasmic reticulum, plastid	10.98	5.56
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:OQU80548	EnsemblPlantsGene:SORBI_3007G142600	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422
PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775	ProteinID:OQU80548	ProteinID:OQU80548.1	SEG:seg
UniParc:UPI000B424782	UniProt:A0A1Z5R9X0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:57248193..57252973

Molecular Weight (calculated)

59276.5 Da

IEP (calculated)

4.941

GRAVY (calculated)

-0.728

Length

528 amino acids

Sequence
(BLAST)

001: MTSIEYQSEP FTKMAENDTS QLQRAIFAQY IMMKKLFMEL EVEREASATA ASAAMSMIQK LQKEKDAERM EAWQYKRIAE EKIKHTNRAL EILKEVMELK
101: ELEISYLRNQ LQVYKHKLSD AGIDDSDIAD ETIDSDKSLF GSKNMENLCH KIKRNFSLPT LQLNKLYTDM DMKKNSGIQS ARSRLSDDSW EQISRNVMPF
201: EPKESFSTDL DGRGKHGEEP HSPSNGVLHD SQTSDEPPCS SSFSVVSHQA RENMECTVNH DQLKDSCVGD SRTLDEPLCS SSLSLVSYQA DICSDGAVQA
301: REDMECTVNH GQLKDSCVRD SQTLDEPPCS SSCSVVSHQA DICSDGAVQA REGMECTVNH DKLKDSCVGT EMGEPVVHPL SDPLQIPERS NTTTDSSCTE
401: SEIMTEESQL SPTVVTKGRG PRNLSRFAAT RKIGSMNNVD RHVRRSSGTY TPRAGVERTR SRLKRVQSEK MVELSDPRTN KEQIIMLKEV YEQLGMIESH
501: MRPSDSQESP RNDTSLDSVM EAALSFSI

Best Arabidopsis Sequence Match ( AT3G54740.2 )
(BLAST)

001: MDSELSFSSR DVVNCCEYGC DYSLGACSSD PLARTVKRKF NEFKEGNNMM LLRGSSDSSS SNAKILVENE CAALLEALSS QRETVKDLHL ELEEERNAAA
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV

Arabidopsis Description

Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [cytosol,nucleus,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.