Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34794 | Canola | nucleus | 96.58 | 95.4 |
| AT2G24140.2 | Thale cress | nucleus | 69.57 | 69.14 |
| CDX68698 | Canola | cytosol | 47.52 | 52.04 |
| CDY28219 | Canola | cytosol | 47.52 | 52.04 |
| CDX72271 | Canola | nucleus | 54.66 | 45.6 |
| CDY13389 | Canola | nucleus | 54.35 | 43.53 |
| CDX88641 | Canola | nucleus | 13.04 | 34.43 |
| CDY51277 | Canola | nucleus | 32.61 | 28.53 |
| CDY50792 | Canola | nucleus | 32.3 | 28.26 |
| CDY11846 | Canola | nucleus | 19.88 | 26.89 |
| CDX88643 | Canola | nucleus | 19.88 | 26.89 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 37.89 | 26.01 |
| CDY32744 | Canola | nucleus | 29.19 | 25.68 |
| CDY02772 | Canola | nucleus | 28.88 | 25.41 |
| KRH72337 | Soybean | nucleus | 36.34 | 24.95 |
| KRH03013 | Soybean | nucleus | 36.65 | 24.89 |
| KRH55008 | Soybean | cytosol | 12.11 | 24.22 |
| KRH12784 | Soybean | nucleus | 33.54 | 23.68 |
| KRH63109 | Soybean | nucleus | 33.54 | 23.43 |
| KRH37764 | Soybean | nucleus | 33.23 | 23.36 |
| Solyc07g005910.2.1 | Tomato | nucleus | 31.06 | 22.08 |
| PGSC0003DMT400028965 | Potato | nucleus | 30.75 | 21.85 |
| PGSC0003DMT400023950 | Potato | nucleus | 30.12 | 21.8 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 18.01 | 20.0 |
| Solyc11g020850.1.1 | Tomato | nucleus | 31.06 | 19.05 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 20.81 | 17.77 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 20.5 | 17.41 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 20.5 | 17.41 |
| CDY09477 | Canola | nucleus | 9.94 | 17.2 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 22.36 | 16.51 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 22.67 | 16.48 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 22.67 | 16.48 |
| CDY01114 | Canola | extracellular, plasma membrane | 13.35 | 16.48 |
| CDY47332 | Canola | extracellular, plasma membrane | 13.35 | 16.48 |
| Os08t0442350-01 | Rice | nucleus | 25.47 | 16.47 |
| Zm00001d024102_P002 | Maize | nucleus | 18.01 | 16.38 |
| CDY14078 | Canola | nucleus | 19.25 | 16.06 |
| CDX76130 | Canola | cytosol | 18.94 | 15.33 |
| OQU80230 | Sorghum | cytosol | 18.94 | 15.25 |
| CDX98935 | Canola | nucleus | 19.25 | 15.2 |
| OQU80548 | Sorghum | nucleus | 24.84 | 15.15 |
| GSMUA_Achr10P... | Banana | nucleus | 22.67 | 15.15 |
| CDY04993 | Canola | nucleus | 19.25 | 15.12 |
| CDY02887 | Canola | cytosol, nucleus, peroxisome | 17.7 | 15.04 |
| CDX78259 | Canola | nucleus | 18.94 | 15.02 |
| CDY08489 | Canola | nucleus | 18.01 | 14.99 |
| CDX73453 | Canola | nucleus | 18.94 | 14.73 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 19.57 | 14.72 |
| CDX70091 | Canola | nucleus | 19.25 | 14.52 |
| CDX67607 | Canola | peroxisome | 18.63 | 14.29 |
| CDY01064 | Canola | nucleus | 19.25 | 13.9 |
| CDY07526 | Canola | nucleus | 12.42 | 13.89 |
| CDY67532 | Canola | nucleus | 17.39 | 13.43 |
| CDY70407 | Canola | peroxisome | 14.6 | 12.74 |
| Solyc12g009900.1.1 | Tomato | cytosol | 22.98 | 11.62 |
| Zm00001d032145_P001 | Maize | nucleus | 21.43 | 11.15 |
| PGSC0003DMT400020469 | Potato | cytosol | 23.29 | 10.81 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 15.84 | 9.79 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 15.84 | 9.79 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 16.46 | 9.58 |
| CDX68162 | Canola | extracellular, plasma membrane, vacuole | 14.6 | 9.53 |
| CDX85859 | Canola | extracellular, plasma membrane, vacuole | 14.6 | 9.53 |
| CDY68842 | Canola | vacuole | 16.46 | 9.41 |
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 13.98 | 8.69 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 13.98 | 8.64 |
| CDY45396 | Canola | extracellular, golgi, vacuole | 14.29 | 8.49 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 13.04 | 8.42 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 13.35 | 8.41 |
| CDX73116 | Canola | extracellular, golgi, vacuole | 14.29 | 8.35 |
| CDX96274 | Canola | mitochondrion | 18.63 | 8.15 |
| CDY16985 | Canola | endoplasmic reticulum, golgi | 16.77 | 7.95 |
| CDX69426 | Canola | endoplasmic reticulum, golgi, plastid | 16.77 | 7.89 |
| CDY11550 | Canola | mitochondrion | 18.63 | 7.52 |
| CDY31127 | Canola | cytosol | 14.29 | 7.08 |
| CDY10753 | Canola | endoplasmic reticulum, plasma membrane | 15.22 | 6.89 |
| CDY47125 | Canola | endoplasmic reticulum, plasma membrane | 15.22 | 6.8 |
| CDY29652 | Canola | endoplasmic reticulum | 14.91 | 6.58 |
| CDY67896 | Canola | endoplasmic reticulum, vacuole | 14.91 | 6.29 |
| CDY32134 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 13.04 | 4.81 |
| CDX95032 | Canola | endoplasmic reticulum, vacuole | 13.98 | 4.7 |
| CDX93536 | Canola | extracellular, vacuole | 13.98 | 4.67 |
| CDY07525 | Canola | peroxisome | 1.24 | 4.17 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX76832 | EnsemblPlantsGene:GSBRNA2T00127339001 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF1 | PFAM:PF04576 | PFscan:PS51775 | ProteinID:CDX76832 | ProteinID:CDX76832.1 | SEG:seg |
| UniParc:UPI0004EF45D2 | MapMan:35.2 | : | : | : | : |
Description
BnaC08g34180D
Coordinates
chrLK031808:+:1342007..1343055
Molecular Weight (calculated)
37303.1 Da
IEP (calculated)
4.629
GRAVY (calculated)
-0.716
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRSYSLNM RGVESQDLRI ALYEMKEDAQ RLQEELDAER EATATSASEA MSMILRLQGE KAALVMEASQ YRRMVEERMS HAELSLELLE DLNYQKEVEI
101: KNLESRLYAY KCKLLNLGCK GTDDDRSFSD MRWCDRSPEP VDTDVLVPVE KEVIEQSLDP SRRHQEKNLD LCWDQIKKLD EQLKELTDCI KMETFSVSET
201: KNGEISEAFA ASSSNIQDMV PKVCKKSSKR KRKISVKRDH VQGGFSENDA EYQAELQRLR ERVEQLERAR CNAEPQTSEV KQEEELSFVQ AEMKNSRTTV
301: ELFPCYDSAI VSVQEAMLYF WL
101: KNLESRLYAY KCKLLNLGCK GTDDDRSFSD MRWCDRSPEP VDTDVLVPVE KEVIEQSLDP SRRHQEKNLD LCWDQIKKLD EQLKELTDCI KMETFSVSET
201: KNGEISEAFA ASSSNIQDMV PKVCKKSSKR KRKISVKRDH VQGGFSENDA EYQAELQRLR ERVEQLERAR CNAEPQTSEV KQEEELSFVQ AEMKNSRTTV
301: ELFPCYDSAI VSVQEAMLYF WL
001: MVGRSYSLET RGFESTTDLR IALYEMKEDV QRLEEELDAE REATATSASE AMSVILRLQG EKALLAMEAS QYKRMVEERM SHVELSMELL EDLNYQKEVE
101: IKNLECDLHA YRCKLMSLGW SGLDDEDCIR FCDRSQTPSP EPNETVLVEK GVIEQSLDSR RDHEKNLDLN WEKIKKVDEQ LKELTDFRDS VRDQYKILKQ
201: ETTSVSETKN GEKGMCKPDL LVKKMSKKSL KQKRDKSIKR DQALGSCSAN DAEYQAELQR LRERVERLEQ ERCNKEPAQT SGVSQENMNL QRKSEEELSS
301: MQSAMFSYDS AIVSVQEAML YFWL
101: IKNLECDLHA YRCKLMSLGW SGLDDEDCIR FCDRSQTPSP EPNETVLVEK GVIEQSLDSR RDHEKNLDLN WEKIKKVDEQ LKELTDFRDS VRDQYKILKQ
201: ETTSVSETKN GEKGMCKPDL LVKKMSKKSL KQKRDKSIKR DQALGSCSAN DAEYQAELQR LRERVERLEQ ERCNKEPAQT SGVSQENMNL QRKSEEELSS
301: MQSAMFSYDS AIVSVQEAML YFWL
Arabidopsis Description
Protein of unknown function, DUF593 [Source:TAIR;Acc:AT2G24140]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.