Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G405000.1 | Wheat | nucleus | 95.51 | 96.02 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 93.14 | 93.14 |
| HORVU5Hr1G097200.5 | Barley | cytosol | 90.24 | 79.91 |
| Zm00001d024102_P002 | Maize | nucleus | 52.24 | 55.93 |
| Os08t0269000-01 | Rice | cytosol, golgi, nucleus | 39.58 | 51.72 |
| OQU80230 | Sorghum | cytosol | 52.77 | 50.0 |
| CDX88641 | Canola | nucleus | 9.23 | 28.69 |
| Bra006800.1-P | Field mustard | cytosol | 10.03 | 23.46 |
| Bra006798.1-P | Field mustard | nucleus | 18.21 | 22.55 |
| Bra020409.1-P | Field mustard | nucleus | 18.73 | 22.33 |
| CDX68698 | Canola | cytosol | 16.89 | 21.77 |
| CDY28219 | Canola | cytosol | 16.89 | 21.77 |
| CDY51277 | Canola | nucleus | 21.11 | 21.74 |
| Bra002693.1-P | Field mustard | nucleus | 21.11 | 21.74 |
| CDY50792 | Canola | nucleus | 20.84 | 21.47 |
| Bra002694.1-P | Field mustard | nucleus | 20.58 | 21.2 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 26.12 | 21.11 |
| CDX88643 | Canola | nucleus | 13.19 | 21.01 |
| CDY34794 | Canola | nucleus | 17.94 | 20.86 |
| AT5G57830.1 | Thale cress | nucleus | 21.11 | 20.67 |
| CDX76832 | Canola | nucleus | 17.41 | 20.5 |
| KRH72337 | Soybean | nucleus | 25.07 | 20.26 |
| CDY02772 | Canola | nucleus | 19.53 | 20.22 |
| CDY32744 | Canola | nucleus | 19.53 | 20.22 |
| CDY11846 | Canola | nucleus | 12.66 | 20.17 |
| AT2G24140.2 | Thale cress | nucleus | 17.15 | 20.06 |
| KRH03013 | Soybean | nucleus | 25.07 | 20.04 |
| Bra039233.1-P | Field mustard | nucleus | 17.15 | 19.94 |
| Bra011226.1-P | Field mustard | cytosol | 16.89 | 19.45 |
| KRH37764 | Soybean | nucleus | 23.48 | 19.43 |
| Solyc07g005910.2.1 | Tomato | nucleus | 23.22 | 19.43 |
| PGSC0003DMT400028965 | Potato | nucleus | 22.69 | 18.98 |
| KRH63109 | Soybean | nucleus | 22.96 | 18.87 |
| KRH12784 | Soybean | nucleus | 22.69 | 18.86 |
| AT4G30830.1 | Thale cress | nucleus | 17.94 | 18.73 |
| PGSC0003DMT400023950 | Potato | nucleus | 21.9 | 18.65 |
| CDX72271 | Canola | nucleus | 17.68 | 17.36 |
| KRH55008 | Soybean | cytosol | 7.12 | 16.77 |
| CDY13389 | Canola | nucleus | 17.41 | 16.42 |
| TraesCS7D01G282800.1 | Wheat | nucleus | 18.73 | 16.28 |
| Solyc11g020850.1.1 | Tomato | nucleus | 21.64 | 15.62 |
| TraesCS1D01G145300.1 | Wheat | cytosol | 15.3 | 15.26 |
| TraesCS5D01G380300.1 | Wheat | cytosol | 12.93 | 12.31 |
| TraesCS2D01G272500.1 | Wheat | plastid | 15.3 | 11.96 |
| Solyc12g009900.1.1 | Tomato | cytosol | 17.15 | 10.2 |
| PGSC0003DMT400020469 | Potato | cytosol | 17.15 | 9.37 |
| TraesCS1D01G135800.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 12.4 | 7.54 |
| TraesCS5D01G451800.1 | Wheat | endoplasmic reticulum | 12.14 | 7.13 |
| CDY31127 | Canola | cytosol | 12.14 | 7.08 |
| TraesCS4D01G218100.3 | Wheat | mitochondrion | 15.57 | 7.0 |
| TraesCS4D01G278300.1 | Wheat | golgi, vacuole | 13.46 | 6.77 |
| TraesCS3D01G309900.1 | Wheat | golgi | 14.25 | 6.21 |
| TraesCS4D01G041500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 14.51 | 6.11 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.26 | 0.51 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G410200.1 | EnsemblPlantsGene:TraesCS5D01G410200 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF17 | PFAM:PF04576 | PFscan:PS51775 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5D:-:473470616..473473251
Molecular Weight (calculated)
41448.8 Da
IEP (calculated)
4.908
GRAVY (calculated)
-0.538
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDDEDEGE MAALREALRQ QSLAVEMLKA ELEEERQAAS SGADEALAMI LRLQGEKAAV RMEADQFRRV AEERILHDED SLAFLKAVVF SQEMDITSLK
101: NRLLAVCGSN GPYAPPPGRD GVVDLPWLRR LAQKDVSSGR NASVPAARLE ELCSDLDASE DVGDSRPART VSDIGEVIRR EKEWVRSNVS HQALPPRLHR
201: SSSHRLPRAP SYTAQCAMPS VHDKFEAPES VASHVPPRSS RRSSPEIISE EDDVISSSTR RGDCNDPKPS DERTDGAIAD LGAGIDEIKS SVQTLATELG
301: RMRETSMSRG DAQMQVLAEI CAKLDAMRPT TISKQQNAVH GGKKFSSREV GSSSKGPVTT LPQSELLMNQ FIEAMMYIP
101: NRLLAVCGSN GPYAPPPGRD GVVDLPWLRR LAQKDVSSGR NASVPAARLE ELCSDLDASE DVGDSRPART VSDIGEVIRR EKEWVRSNVS HQALPPRLHR
201: SSSHRLPRAP SYTAQCAMPS VHDKFEAPES VASHVPPRSS RRSSPEIISE EDDVISSSTR RGDCNDPKPS DERTDGAIAD LGAGIDEIKS SVQTLATELG
301: RMRETSMSRG DAQMQVLAEI CAKLDAMRPT TISKQQNAVH GGKKFSSREV GSSSKGPVTT LPQSELLMNQ FIEAMMYIP
001: MMLLRGSSDS SSSNAKILVE NECAALLEAL SSQRETVKDL HLELEEERNA AASAANETMS MILRLQREKA EIQMEARQFK MFAQEKMTHD QEKLSVLENL
101: LYEKEQAIEA LTYEVEAYKH RLLSYGVSEA EIHDQILGFG RDSSTVGFDV YPCEYTSLEC SVDENPSGPD GNFEIEEKVM VGQSPRWPYY DPNSPLGTAK
201: DIKGASFADS PMSSSSDRVY TIDSIHVGVS EVKIDDEPNK MSKGKLNGDH WNSPRYQEPF TTQQGVNEPD IEKLYTRLQA LEADRESLRQ IIVSMRTDKA
301: QLVLLKEIAQ HLTKETGATS RRNPVSKMPS LKVFSVVTVF KWIVSFVSWK RKARQNKYVY ELSANNMGML MILGEGSGTR RWRCLTSSHV
101: LYEKEQAIEA LTYEVEAYKH RLLSYGVSEA EIHDQILGFG RDSSTVGFDV YPCEYTSLEC SVDENPSGPD GNFEIEEKVM VGQSPRWPYY DPNSPLGTAK
201: DIKGASFADS PMSSSSDRVY TIDSIHVGVS EVKIDDEPNK MSKGKLNGDH WNSPRYQEPF TTQQGVNEPD IEKLYTRLQA LEADRESLRQ IIVSMRTDKA
301: QLVLLKEIAQ HLTKETGATS RRNPVSKMPS LKVFSVVTVF KWIVSFVSWK RKARQNKYVY ELSANNMGML MILGEGSGTR RWRCLTSSHV
Arabidopsis Description
Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [peroxisome,plastid,nucleus]
SUBAcon: [peroxisome,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.