Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G199800.1 | Wheat | nucleus | 98.39 | 96.84 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 97.71 | 96.16 |
| Os08t0442350-01 | Rice | nucleus | 61.01 | 53.41 |
| OQU80548 | Sorghum | nucleus | 59.63 | 49.24 |
| Zm00001d032145_P001 | Maize | nucleus | 49.54 | 34.9 |
| CDX68698 | Canola | cytosol | 16.28 | 24.15 |
| CDY28219 | Canola | cytosol | 16.05 | 23.81 |
| Bra006798.1-P | Field mustard | nucleus | 16.28 | 23.2 |
| Bra002693.1-P | Field mustard | nucleus | 19.5 | 23.1 |
| Bra002694.1-P | Field mustard | nucleus | 19.5 | 23.1 |
| CDY51277 | Canola | nucleus | 19.5 | 23.1 |
| AT4G30830.1 | Thale cress | nucleus | 18.81 | 22.59 |
| CDY50792 | Canola | nucleus | 19.04 | 22.55 |
| CDY02772 | Canola | nucleus | 18.81 | 22.4 |
| CDY34794 | Canola | nucleus | 16.74 | 22.39 |
| CDX76832 | Canola | nucleus | 16.51 | 22.36 |
| VIT_11s0037g00610.t01 | Wine grape | nucleus | 23.85 | 22.17 |
| KRH72337 | Soybean | nucleus | 23.85 | 22.17 |
| CDY32744 | Canola | nucleus | 18.35 | 21.86 |
| Bra039233.1-P | Field mustard | nucleus | 16.28 | 21.78 |
| KRH03013 | Soybean | nucleus | 23.62 | 21.73 |
| AT5G57830.1 | Thale cress | nucleus | 19.27 | 21.71 |
| Bra020409.1-P | Field mustard | nucleus | 15.83 | 21.7 |
| CDX88641 | Canola | nucleus | 5.96 | 21.31 |
| KRH55008 | Soybean | cytosol | 7.8 | 21.12 |
| Bra011226.1-P | Field mustard | cytosol | 15.6 | 20.67 |
| PGSC0003DMT400023950 | Potato | nucleus | 20.87 | 20.45 |
| AT2G24140.2 | Thale cress | nucleus | 15.14 | 20.37 |
| Solyc07g005910.2.1 | Tomato | nucleus | 21.1 | 20.31 |
| CDX88643 | Canola | nucleus | 10.78 | 19.75 |
| CDY11846 | Canola | nucleus | 10.78 | 19.75 |
| CDX72271 | Canola | nucleus | 17.43 | 19.69 |
| PGSC0003DMT400028965 | Potato | nucleus | 20.41 | 19.65 |
| KRH37764 | Soybean | nucleus | 20.41 | 19.43 |
| KRH12784 | Soybean | nucleus | 20.18 | 19.3 |
| KRH63109 | Soybean | nucleus | 20.18 | 19.09 |
| TraesCS5D01G410200.1 | Wheat | nucleus | 16.28 | 18.73 |
| GSMUA_Achr10P... | Banana | nucleus | 20.64 | 18.67 |
| Bra006800.1-P | Field mustard | cytosol | 6.88 | 18.52 |
| CDY13389 | Canola | nucleus | 16.97 | 18.41 |
| Solyc11g020850.1.1 | Tomato | nucleus | 20.18 | 16.76 |
| TraesCS1D01G145300.1 | Wheat | cytosol | 11.7 | 13.42 |
| TraesCS5D01G380300.1 | Wheat | cytosol | 10.32 | 11.31 |
| Solyc12g009900.1.1 | Tomato | cytosol | 16.51 | 11.3 |
| PGSC0003DMT400020469 | Potato | cytosol | 16.74 | 10.52 |
| TraesCS2D01G272500.1 | Wheat | plastid | 11.01 | 9.9 |
| TraesCS1D01G135800.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 11.7 | 8.19 |
| TraesCS5D01G451800.1 | Wheat | endoplasmic reticulum | 11.24 | 7.6 |
| TraesCS4D01G218100.3 | Wheat | mitochondrion | 13.99 | 7.24 |
| TraesCS4D01G278300.1 | Wheat | golgi, vacuole | 11.7 | 6.77 |
| CDY31127 | Canola | cytosol | 9.86 | 6.62 |
| TraesCS3D01G309900.1 | Wheat | golgi | 12.39 | 6.21 |
| TraesCS4D01G041500.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 11.47 | 5.56 |
| CDY31126 | Canola | endoplasmic reticulum, mitochondrion, plastid, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G282800.1 | EnsemblPlantsGene:TraesCS7D01G282800 | InterPro:GTD-bd | InterPro:IPR007656 | PANTHER:PTHR31422 | PANTHER:PTHR31422:SF1 |
| PFAM:PF04576 | PFscan:PS51775 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7D:-:290543562..290547455
Molecular Weight (calculated)
49029.0 Da
IEP (calculated)
6.681
GRAVY (calculated)
-0.747
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPFTKLAEN ETAQLQRAVF AQYIMMKKLF MELEEEREAS SSAASAALSM IRKLQKEKEA ERMEACQYRR MAEERMNHSD KALEVVKEVM QHKELEIYYL
101: RSQLQVYKQR LLGVGIDDCD IADETITKSI PLFGSRDVEN LCYTIKRNFS LPTFQLSKRF AEMDMNKNNG SVASARSRLG VYMHNSSENE LEQVSSDLKA
201: IGSKESLAAD MDSTEKHGEE PKPPSNSGTE HSCPSEGSSR SSPFSMAGHH TDICSQRATP VGKDVQDTLH PDPLGSLRPD HEMDNTADTL KHPELSKAPA
301: EYSCTPTKHS ISTKESETPH TVALRDKGSH VLSKFSATRK VGSMNNVDRH VRVAAASSTP RAGVERTRSR LKRVQSEKMI ELNDPKKNKE QIIMLKEVYE
401: QLNMIEAHMR PSPSQETPRN DQSLDSVMEA ALSFSI
101: RSQLQVYKQR LLGVGIDDCD IADETITKSI PLFGSRDVEN LCYTIKRNFS LPTFQLSKRF AEMDMNKNNG SVASARSRLG VYMHNSSENE LEQVSSDLKA
201: IGSKESLAAD MDSTEKHGEE PKPPSNSGTE HSCPSEGSSR SSPFSMAGHH TDICSQRATP VGKDVQDTLH PDPLGSLRPD HEMDNTADTL KHPELSKAPA
301: EYSCTPTKHS ISTKESETPH TVALRDKGSH VLSKFSATRK VGSMNNVDRH VRVAAASSTP RAGVERTRSR LKRVQSEKMI ELNDPKKNKE QIIMLKEVYE
401: QLNMIEAHMR PSPSQETPRN DQSLDSVMEA ALSFSI
001: MMLLRGSSDS SSSNAKILVE NECAALLEAL SSQRETVKDL HLELEEERNA AASAANETMS MILRLQREKA EIQMEARQFK MFAQEKMTHD QEKLSVLENL
101: LYEKEQAIEA LTYEVEAYKH RLLSYGVSEA EIHDQILGFG RDSSTVGFDV YPCEYTSLEC SVDENPSGPD GNFEIEEKVM VGQSPRWPYY DPNSPLGTAK
201: DIKGASFADS PMSSSSDRVY TIDSIHVGVS EVKIDDEPNK MSKGKLNGDH WNSPRYQEPF TTQQGVNEPD IEKLYTRLQA LEADRESLRQ IIVSMRTDKA
301: QLVLLKEIAQ HLTKETGATS RRNPVSKMPS LKVFSVVTVF KWIVSFVSWK RKARQNKYVY ELSANNMGML MILGEGSGTR RWRCLTSSHV
101: LYEKEQAIEA LTYEVEAYKH RLLSYGVSEA EIHDQILGFG RDSSTVGFDV YPCEYTSLEC SVDENPSGPD GNFEIEEKVM VGQSPRWPYY DPNSPLGTAK
201: DIKGASFADS PMSSSSDRVY TIDSIHVGVS EVKIDDEPNK MSKGKLNGDH WNSPRYQEPF TTQQGVNEPD IEKLYTRLQA LEADRESLRQ IIVSMRTDKA
301: QLVLLKEIAQ HLTKETGATS RRNPVSKMPS LKVFSVVTVF KWIVSFVSWK RKARQNKYVY ELSANNMGML MILGEGSGTR RWRCLTSSHV
Arabidopsis Description
Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [peroxisome,plastid,nucleus]
SUBAcon: [peroxisome,plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.