Factsheet for PGSC0003DMT400020469

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009900.1.1	Tomato	cytosol	64.84	70.64
CDX88641	Canola	nucleus	5.76	32.79
Bra006798.1-P	Field mustard	nucleus	12.82	29.09
CDY50792	Canola	nucleus	14.55	27.45
Bra006800.1-P	Field mustard	cytosol	6.34	27.16
Bra002693.1-P	Field mustard	nucleus	14.27	26.9
Bra002694.1-P	Field mustard	nucleus	14.27	26.9
CDY51277	Canola	nucleus	14.27	26.9
Bra020409.1-P	Field mustard	nucleus	12.25	26.73
CDY28219	Canola	cytosol	11.1	26.19
CDX88643	Canola	nucleus	8.93	26.05
CDY32744	Canola	nucleus	13.69	25.96
AT5G57830.1	Thale cress	nucleus	14.41	25.84
CDY02772	Canola	nucleus	13.54	25.68
CDY11846	Canola	nucleus	8.79	25.63
CDX68698	Canola	cytosol	10.66	25.17
PGSC0003DMT400028965	Potato	nucleus	16.28	24.94
PGSC0003DMT400023950	Potato	nucleus	15.99	24.94
AT4G30830.1	Thale cress	nucleus	12.97	24.79
VIT_11s0037g00610.t01	Wine grape	nucleus	15.85	23.45
CDX76832	Canola	nucleus	10.81	23.29
CDY34794	Canola	nucleus	10.81	23.01
Bra039233.1-P	Field mustard	nucleus	10.81	23.01
Bra011226.1-P	Field mustard	cytosol	10.66	22.49
CDY13389	Canola	nucleus	12.97	22.39
CDX72271	Canola	nucleus	12.39	22.28
AT2G24140.2	Thale cress	nucleus	10.37	22.22
PGSC0003DMT400022326	Potato	nucleus	15.56	21.77
KRH12784	Soybean	nucleus	14.12	21.49
KRH37764	Soybean	nucleus	13.83	20.96
KRH03013	Soybean	nucleus	14.12	20.68
KRH72337	Soybean	nucleus	13.83	20.47
KRH63109	Soybean	nucleus	13.54	20.39
PGSC0003DMT400072288	Potato	plastid	14.84	19.96
Os08t0269000-01	Rice	cytosol, golgi, nucleus	7.93	18.97
KRH55008	Soybean	cytosol	4.18	18.01
GSMUA_Achr10P...	Banana	nucleus	12.39	17.84
TraesCS5B01G405000.1	Wheat	nucleus	9.51	17.51
TraesCS5D01G410200.1	Wheat	nucleus	9.37	17.15
TraesCS5A01G400200.1	Wheat	nucleus	9.37	17.15
Zm00001d024102_P002	Maize	nucleus	8.65	16.95
OQU80230	Sorghum	cytosol	9.65	16.75
TraesCS7D01G282800.1	Wheat	nucleus	10.52	16.74
TraesCS7B01G199800.1	Wheat	nucleus	10.66	16.7
TraesCS7A01G285400.1	Wheat	nucleus	10.37	16.25
HORVU5Hr1G097200.5	Barley	cytosol	9.8	15.89
PGSC0003DMT400011603	Potato	nucleus	11.53	15.69
Os08t0442350-01	Rice	nucleus	11.24	15.66
OQU80548	Sorghum	nucleus	10.81	14.2
Zm00001d032145_P001	Maize	nucleus	11.1	12.44
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	7.78	10.42
PGSC0003DMT400062848	Potato	golgi	8.5	9.85
PGSC0003DMT400083120	Potato	endoplasmic reticulum	8.36	9.7
PGSC0003DMT400070777	Potato	golgi, plasma membrane, plastid	9.37	7.55
PGSC0003DMT400075922	Potato	endoplasmic reticulum, golgi	8.5	6.88
CDY31127	Canola	cytosol	5.91	6.31
PGSC0003DMT400080686	Potato	endoplasmic reticulum, golgi, plastid	9.22	5.56
CDY31126	Canola	endoplasmic reticulum, mitochondrion, plastid, vacuole	0.14	0.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400020469	EnsemblPlantsGene:PGSC0003DMG400007910	EntrezGene:107061102	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775	PGSC:PGSC0003DMG400007910	SEG:seg
UniParc:UPI0002952E16	UniProt:M1ADJ4	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007910]

Coordinates

chr12:-:2423343..2426044

Molecular Weight (calculated)

79279.5 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.573

Length

694 amino acids

Sequence
(BLAST)

001: MADIGKAMSR FDVESLQEMH CVQEQLIEKL YNELDEESEA SSSAATEALS MILRLQGEKA AEEMEAEQYK RFVEEKMSHA EESLCVLQEL IDQKQMEIDE
101: LDHHAQVYRN KLVSMGYDDD IDDSDLEYLE DLEGKMIVQS IGRCKSTPNI PLKYANMKKD VLKDEKISPK RDLNDVPTAG SISLYCEQIE KLEERVKQIA
201: GANYAKLSSL PVSKRSSCNN FLEQFKETYL VQHRGNKSAN EVAASRSASP PNVLDVFEVP RAIKDEDFVV RKEAQKQLVK DETDWHKKYL VPMQHLDNCP
301: TTSASETAEI RHVNRTTFEI AEVKRQGMRQ EPDRHKELML LHDIKEQLNL VPIKHLKNCP MTNASETAEI RRVNKKFEIA EVERHGTRQE TERHKELMLL
401: HDIKEQLNLV PMQNENKLHR VGEAASPTTS SSETAEICPV NRTTFEIAEV KRQGMRQEPD RHKELMLLHD IKEQLNLVPM QNENKLHRVG EAASPTTSSS
501: ETAEICPVNR TTFEIAEVER QRTRQESNRH EELTLLYEIK EQLNLMQSDI KTWKNIKSHP RNEPSVVSLT EVLSLTALYV LLCCYKKNIV LAISHVAQTL
601: QNVVAPLISM LQKCTAFGGS DTHPYSISSK CTTFGGSYMH KSTILTSPSN IGNKYIKSDS ALIWWTGDGL LLALIQLSKS LQVQDVEIFA YYDF

Best Arabidopsis Sequence Match ( AT5G57830.1 )
(BLAST)

001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.