Factsheet for PGSC0003DMT400083120

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071190.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	97.16	90.92
PGSC0003DMT400062848	Potato	golgi	65.05	64.94
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	56.19	64.86
VIT_17s0000g05320.t01	Wine grape	endoplasmic reticulum, golgi	48.83	47.02
AT1G18990.1	Thale cress	endoplasmic reticulum, plasma membrane	40.97	46.76
CDY26705	Canola	endoplasmic reticulum, plasma membrane, plastid	40.3	46.53
Bra003783.1-P	Field mustard	extracellular, plasma membrane	36.79	46.41
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	39.97	46.14
CDY19266	Canola	endoplasmic reticulum, nucleus, plasma membrane	40.13	46.07
KRH63445	Soybean	endoplasmic reticulum	47.16	45.85
KRH54475	Soybean	endoplasmic reticulum	46.15	45.85
CDY21687	Canola	endoplasmic reticulum, vacuole	38.63	45.21
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	38.63	45.21
CDX85859	Canola	extracellular, plasma membrane, vacuole	36.96	44.83
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	40.64	44.75
AT1G74830.1	Thale cress	extracellular, golgi, vacuole	40.47	44.65
CDX81908	Canola	endoplasmic reticulum, vacuole	37.12	44.49
CDY45396	Canola	extracellular, golgi, vacuole	39.8	43.91
CDX68162	Canola	extracellular, plasma membrane, vacuole	36.12	43.81
CDX73116	Canola	extracellular, golgi, vacuole	40.3	43.74
PGSC0003DMT400075922	Potato	endoplasmic reticulum, golgi	28.93	20.16
PGSC0003DMT400070777	Potato	golgi, plasma membrane, plastid	28.76	19.98
PGSC0003DMT400022326	Potato	nucleus	12.04	14.52
PGSC0003DMT400023950	Potato	nucleus	10.7	14.38
PGSC0003DMT400072288	Potato	plastid	12.21	14.15
PGSC0003DMT400028965	Potato	nucleus	10.54	13.91
PGSC0003DMT400080686	Potato	endoplasmic reticulum, golgi, plastid	25.59	13.29
PGSC0003DMT400011603	Potato	nucleus	10.37	12.16
PGSC0003DMT400020469	Potato	cytosol	9.7	8.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400083120	EnsemblPlantsGene:PGSC0003DMG400033062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0017022	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31448	PANTHER:PTHR31448:SF9	PFAM:PF04576	PFscan:PS51775	PGSC:PGSC0003DMG400033062	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002956A8A	UniProt:M1D6I9	MapMan:20.2.4.3	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033062]

Coordinates

chr6:+:52029251..52032946

Molecular Weight (calculated)

67911.1 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.548

Length

598 amino acids

Sequence
(BLAST)

001: MGKFAFFFLY AILEWVLIIV LFVDGFLAFF SNEFAKFFEL NIPCLLCTRI DHVLVNRNSS FYYNESICEV HKKDLSALAY CHVHKKLSEI KNMCEGCLLS
101: FATERDADCE RYKSLAGVLK KDIDCFAGDD ARLSVRTGKK ELDEAIQIER GVVARCSCCG EPLKMRSKFA RNASINGRSY SQAPAPSPRA SPRAPLLGAW
201: RNIEEVRHLE SPRSVRYTEL KFTQDDEGPS HGGKEDVKAA TMPLLPDSED THIDSSCKTP NNTRNRFFGI PLSDSAQASP RFSHHRPRKS WISDKLDFTS
301: EANDMNSVPS DLEEDVLNRL KKQVRLDRKS LVELYMELDE ERSASAIAAN NAMAMITRLQ AEKAAVEMEA FQYQRMMEEQ AEYDQEALQF MNDDLLKKED
401: EMKLLQVELE TYREKYGLIK TIGSEVCEVD DDEDYQELKS QCLSSISERS DCASPFEADH HRVNERLFEC PGENGGVNVE ESQLDFEKQR SYLMGLLTDV
501: VEKIQISPEE GPHTLEPKMT EQRAGNENKV ALTREVSLIR ERLRAIEAES GFLKHAAMTL QSGDEGSKLL TEIAQHLQNL RHTSNTSSEY ADAGRQSN

Best Arabidopsis Sequence Match ( AT5G16720.1 )
(BLAST)

001: MAANNFATKL SRNTNRITVI LVYAFLEWLL MFFIFLNSFF TYFIVKFASF FGLKQVCLLC PKLDRIFERK PENRFTYKEL LCQNHIAELA SLSFCRTHGK
101: LSESANLCSD CSNREEEQSN IGLGFCTCCQ KSLADKPYPN YLLLKSSIWG KTLGDREDGG LILEMIDDDK FGDGFEIDRE SYPLGFFRDK AEEGKKQDQQ
201: QNGEVISDVE SYGLSLREVS EEDGLRSIIS NNSPGNEAKS RVSEDEQRND DTSNVATYGE DQISGRVEEK EEETGVADLL YDQFESKNFT GSQIEEEEED
301: REETTKELDP ETPTSVSTLF NKKLHFLARN EYAAAEDAGD GNVLVSEMDG GDPLRTIERL RETVRAEQEA LRDLYAELEE ERSASAISAN QTMAMITRLQ
401: EEKAKVQMEA LQYQRMMEEQ AEYDQEALQL LNHLMVKREK EKEQLQRELE VYRAKVLEYE SKAKNKIIVV ENDCEADDDD KEEENREEDN SSEMDVDLEK
501: ITLDCVQHMS MLGESLSEFE EERLVILDQL KVLEDRLVTM QDKESAEDPG EFSNSYEEAS NGHGGLTMAS MAKSLLPLLD AAENESEDGS QGLPESDEKN
601: FGSDSEKLEI IKQVDSVYER LQELETDGEF LKNCMSSAKK GDKGTDILKD ILQHLRDLRT IELTNTIENQ TTQEE

Arabidopsis Description

MYOB3Myosin-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNW4]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.