Factsheet for VIT_17s0000g05320.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
golgi 3
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54475	Soybean	endoplasmic reticulum	50.89	52.49
KRH63445	Soybean	endoplasmic reticulum	51.53	52.03
Solyc12g027730.1.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	43.0	51.45
PGSC0003DMT400062848	Potato	golgi	49.6	51.42
Solyc03g113600.2.1	Tomato	golgi	49.28	51.17
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	42.35	50.77
PGSC0003DMT400083120	Potato	endoplasmic reticulum	47.02	48.83
Bra003783.1-P	Field mustard	extracellular, plasma membrane	36.55	47.89
AT1G18990.1	Thale cress	endoplasmic reticulum, plasma membrane	39.77	47.14
CDY26705	Canola	endoplasmic reticulum, plasma membrane, plastid	39.13	46.91
Solyc06g071190.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	48.15	46.79
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	38.81	46.53
CDX81908	Canola	endoplasmic reticulum, vacuole	37.36	46.49
CDY19266	Canola	endoplasmic reticulum, nucleus, plasma membrane	38.97	46.45
CDX68162	Canola	extracellular, plasma membrane, vacuole	36.72	46.25
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	40.26	46.04
CDY21687	Canola	endoplasmic reticulum, vacuole	37.68	45.79
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	37.68	45.79
CDX85859	Canola	extracellular, plasma membrane, vacuole	36.23	45.64
AT1G74830.1	Thale cress	extracellular, golgi, vacuole	39.77	45.57
CDY45396	Canola	extracellular, golgi, vacuole	39.77	45.57
CDX73116	Canola	extracellular, golgi, vacuole	40.1	45.19
VIT_07s0141g00860.t01	Wine grape	golgi	25.6	20.81
VIT_14s0006g00920.t01	Wine grape	endoplasmic reticulum, golgi	29.63	20.2
VIT_14s0081g00320.t01	Wine grape	nucleus	21.58	18.43
VIT_01s0011g05340.t01	Wine grape	endoplasmic reticulum, golgi	30.11	17.48
VIT_08s0032g00720.t01	Wine grape	plastid	13.85	16.54
VIT_11s0037g00610.t01	Wine grape	nucleus	11.27	14.93
VIT_05s0029g00110.t01	Wine grape	endoplasmic reticulum, golgi	15.94	12.42

Protein Annotations

EntrezGene:100251925	wikigene:100251925	MapMan:20.2.4.3	EMBL:AM469216	ProteinID:CAN74948	ProteinID:CAN74948.1
ProteinID:CCB43137	ProteinID:CCB43137.1	ncoils:Coil	UniProt:F6GTC8	EMBL:FN594950	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0017022
InterPro:GTD-bd	InterPro:IPR007656	EntrezGene:LOC100251925	wikigene:LOC100251925	PFAM:PF04576	PFscan:PS51775
PANTHER:PTHR31448	PANTHER:PTHR31448:SF9	TMHMM:TMhelix	UniParc:UPI0001985276	ArrayExpress:VIT_17s0000g05320	EnsemblPlantsGene:VIT_17s0000g05320
EnsemblPlants:VIT_17s0000g05320.t01	RefSeq:XP_002266065	RefSeq:XP_002266065.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:5809177..5813137

Molecular Weight (calculated)

70342.7 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.618

Length

621 amino acids

Sequence
(BLAST)

001: MAWRSFKRIV EQELGYLPQF VIYAILEWVV IILLFLDGFI GFVANEFAKF FELKTPCLLC TRIDHVLVHR NPSFYYNDSI CEDHKKDVSS LAYCHAHRKL
101: SDIRMMCEGC LISFATERGD DCETHRSLVG ILHNTVEPFV DNDHKMQVKL PVGQVDKSGV HQCSCCGGPL KMRASMTKGH VPRSASHGNL LSQAPTPSPR
201: APFFATRNED FRHLELPQIR HMDLKFSSDN ESELLEDEYS SYASIQGRED VKACTVPLLT ESEDSNEERT PMGFSRGNRF FGISLTDSAT SSPRWATRLP
301: RKPVLEKAEF VLEPLEGNAA NEADSDSTMQ RLKRQARLDR KSLIALYMEL DEERSASAIA ANNAMAMITR LQAEKASVQM EALQYQRMME EQAEYDQEDL
401: QAMRDLLGKR EDEIKALEAE LEMYQPKNES SKKFTVEGCD SIEIQGDEDD QQLKSESLSE KSECSSPAFC FNEVENNGEH QHKYDQTRSL QEENGGETIE
501: KSSGDFEGER SNLLNQLKNM KKFHSSAHSG RHSLQLSFDM VNDTEEGTGN DTGDACNDII SREVPHLHEK LKALEEDGGF LNHAARALEK GSEGRNILTQ
601: IAHHLHKLQD LVKIPLEDDC E

Best Arabidopsis Sequence Match ( AT1G74830.1 )
(BLAST)

001: MYIQLLCFFL FLFLLLQATM SKRSFKKFVE QELGSLPHFL IYTVLEWSLI VFLFIDGVIA FLSNQFAKFF DLNIPCLLCT RIDHILVPRD PQFYYNESIC
101: DSHKKKVSSL AYCHVHKKLS EIKHMCEGCL LSFATEKDSD CDTYKSLIGI LHKDLELLID DERDLPLAFK KDDNLVQTTK NLVDYKTNNI KNDSLKQHCS
201: CCGELLKIKS EKLPKNNNSF LAPAPSPRVS HNKLSENESE FKDMDVDRTP SFVRGGNKFF GIPLSDSAQN SPRWSVRSLK KSVLNKTENA SDTTDPTGES
301: ILNQLKKEVR LDKKSLIDLY MELDEERSAS AVAANEAMAM ITRLQAEKAA VQMEALQYQR MMDEQAEYDQ EALQSMSSEL AKREEEMKEL EAEFEVYREK
401: YGCLTDQEDA REEFHKQNGN ASAYDDCQET KPVSDLAVSS SNQQENGENI DQNGQSKRSE ESTAENVVSA DEEKGSESKE GIVKELSEIT ERLSTLQSNG
501: DLLKHIADVL DVSEGEAILL QISQNLHMLR SFVAMPSESM NL

Arabidopsis Description

MYOB6Probable myosin-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HVS6]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.