Factsheet for Solyc12g027730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030876	Potato	endoplasmic reticulum, extracellular	93.64	93.82
Solyc03g113600.2.1	Tomato	golgi	67.44	58.53
Solyc06g071190.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	67.05	54.46
Bra003783.1-P	Field mustard	extracellular, plasma membrane	42.39	46.41
AT1G18990.1	Thale cress	endoplasmic reticulum, plasma membrane	46.44	45.99
CDY26705	Canola	endoplasmic reticulum, plasma membrane, plastid	45.09	45.17
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	44.32	45.01
CDY21687	Canola	endoplasmic reticulum, vacuole	44.32	45.01
CDY19266	Canola	endoplasmic reticulum, nucleus, plasma membrane	45.09	44.91
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	44.7	44.79
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	46.63	44.57
CDX81908	Canola	endoplasmic reticulum, vacuole	42.77	44.49
CDX85859	Canola	extracellular, plasma membrane, vacuole	42.0	44.22
CDY45396	Canola	extracellular, golgi, vacuole	46.05	44.1
AT1G74830.1	Thale cress	extracellular, golgi, vacuole	45.86	43.91
KRH63445	Soybean	endoplasmic reticulum	51.64	43.58
CDX73116	Canola	extracellular, golgi, vacuole	46.24	43.56
CDX68162	Canola	extracellular, plasma membrane, vacuole	41.04	43.2
KRH54475	Soybean	endoplasmic reticulum	50.1	43.19
VIT_17s0000g05320.t01	Wine grape	endoplasmic reticulum, golgi	51.45	43.0
Solyc11g045470.1.1	Tomato	cytosol	6.55	40.48
Solyc04g007870.2.1	Tomato	endoplasmic reticulum, golgi	33.14	20.67
Solyc01g097040.2.1	Tomato	golgi, plasma membrane, plastid	32.56	18.55
Solyc10g081620.1.1	Tomato	cytosol, plastid	14.26	14.34
Solyc07g005910.2.1	Tomato	nucleus	11.95	13.69
Solyc09g066140.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	28.71	12.47
Solyc11g020850.1.1	Tomato	nucleus	11.95	11.81
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	15.99	11.14
Solyc12g009900.1.1	Tomato	cytosol	10.98	8.95
Solyc11g045480.1.1	Tomato	mitochondrion	2.7	6.9

Protein Annotations

EnsemblPlants:Solyc12g027730.1.1	EnsemblPlantsGene:Solyc12g027730.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0017022	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31448	PANTHER:PTHR31448:SF9	PFAM:PF04576	PFscan:PS51775	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002769B6D	UniProt:K4DDU1	MapMan:20.2.4.3	:	:	:

Description

No Description!

Coordinates

chr12:+:25916402..25918134

Molecular Weight (calculated)

59615.0 Da

IEP (calculated)

5.052

GRAVY (calculated)

-0.426

Length

519 amino acids

Sequence
(BLAST)

001: MAFKCCVEQK MGKFAFFLIY ALLEWVMILL LFIEGFLAFF SNEYAKLFDL KIPCLLCTRI DHILVHRDAS FYYNDSICEV HKKDISSLAY CHVHKKLSDI
101: KNMCEGCLLS FATEKDADCD RYKSLVGILH KDIDCFVKDA LHTKKEDNEV MLQTTTSFVW CSCCGEPLKM RSKSNPSSQA PWRNEDYTQL KFISDNDLDD
201: GAGREDNIKG ASEEINDNAL KTANFTRNMF FGIPLSDSCQ ASPRWSHRPR KLSMELISES NDVVNESDND ILHRLKRQVH LDHKSVIALY MELDEERSAA
301: AVAANNAMAM ITRLQAEKAA VQMEALQYQR MMEEQAEYDQ EALQVMKDLL LKREEDIKVM EVVVETYRER YGDMKGVGSE VCEVGEYQEW NSYSFSSLSE
401: RSTCVSPDEG DQHRLGPFEP HLDFEHERCY LMGLLTKLED KITTSKDGFY ESEGKGSENK AILRTEVSVI RERLSAIEAE SMFLKHATMT LQRDDEGIKL
501: LTEIAQHLRR LRQSKDGSA

Best Arabidopsis Sequence Match ( AT1G74830.1 )
(BLAST)

001: MYIQLLCFFL FLFLLLQATM SKRSFKKFVE QELGSLPHFL IYTVLEWSLI VFLFIDGVIA FLSNQFAKFF DLNIPCLLCT RIDHILVPRD PQFYYNESIC
101: DSHKKKVSSL AYCHVHKKLS EIKHMCEGCL LSFATEKDSD CDTYKSLIGI LHKDLELLID DERDLPLAFK KDDNLVQTTK NLVDYKTNNI KNDSLKQHCS
201: CCGELLKIKS EKLPKNNNSF LAPAPSPRVS HNKLSENESE FKDMDVDRTP SFVRGGNKFF GIPLSDSAQN SPRWSVRSLK KSVLNKTENA SDTTDPTGES
301: ILNQLKKEVR LDKKSLIDLY MELDEERSAS AVAANEAMAM ITRLQAEKAA VQMEALQYQR MMDEQAEYDQ EALQSMSSEL AKREEEMKEL EAEFEVYREK
401: YGCLTDQEDA REEFHKQNGN ASAYDDCQET KPVSDLAVSS SNQQENGENI DQNGQSKRSE ESTAENVVSA DEEKGSESKE GIVKELSEIT ERLSTLQSNG
501: DLLKHIADVL DVSEGEAILL QISQNLHMLR SFVAMPSESM NL

Arabidopsis Description

MYOB6Probable myosin-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HVS6]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.