Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26705 | Canola | endoplasmic reticulum, plasma membrane, plastid | 83.78 | 84.75 |
| Bra025705.1-P | Field mustard | endoplasmic reticulum, plasma membrane, plastid | 83.4 | 84.36 |
| CDY19266 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 83.4 | 83.88 |
| CDY21687 | Canola | endoplasmic reticulum, vacuole | 79.39 | 81.41 |
| Bra031059.1-P | Field mustard | endoplasmic reticulum, vacuole | 79.39 | 81.41 |
| CDX81908 | Canola | endoplasmic reticulum, vacuole | 76.53 | 80.36 |
| AT1G74830.1 | Thale cress | extracellular, golgi, vacuole | 66.22 | 64.02 |
| PGSC0003DMT400030876 | Potato | endoplasmic reticulum, extracellular | 46.18 | 46.72 |
| Solyc12g027730.1.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 45.99 | 46.44 |
| KRH54475 | Soybean | endoplasmic reticulum | 51.53 | 44.85 |
| KRH63445 | Soybean | endoplasmic reticulum | 51.72 | 44.06 |
| PGSC0003DMT400083120 | Potato | endoplasmic reticulum | 46.76 | 40.97 |
| PGSC0003DMT400062848 | Potato | golgi | 46.76 | 40.9 |
| Solyc03g113600.2.1 | Tomato | golgi | 46.18 | 40.47 |
| VIT_17s0000g05320.t01 | Wine grape | endoplasmic reticulum, golgi | 47.14 | 39.77 |
| Solyc06g071190.2.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 47.71 | 39.12 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 11.64 | 21.63 |
| AT5G16720.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 26.91 | 20.89 |
| AT1G70750.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion | 24.05 | 16.82 |
| AT2G30690.2 | Thale cress | endoplasmic reticulum, plasma membrane, plastid | 22.52 | 15.53 |
| AT3G54740.3 | Thale cress | cytosol, nucleus, peroxisome | 12.02 | 14.38 |
| AT1G04890.1 | Thale cress | mitochondrion | 11.07 | 14.11 |
| AT5G06560.1 | Thale cress | nucleus | 13.93 | 14.09 |
| AT5G57830.1 | Thale cress | nucleus | 9.73 | 13.18 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 13.93 | 12.83 |
| AT1G08800.1 | Thale cress | extracellular, vacuole | 27.1 | 12.76 |
| AT4G30830.1 | Thale cress | nucleus | 8.59 | 12.4 |
| AT2G24140.2 | Thale cress | nucleus | 7.63 | 12.35 |
| AT3G11850.2 | Thale cress | nucleus | 10.88 | 11.31 |
Protein Annotations
| MapMan:20.2.4.3 | EntrezGene:838480 | ProteinID:AAF79302.1 | ProteinID:AEE29787.1 | ArrayExpress:AT1G18990 | EnsemblPlantsGene:AT1G18990 |
| RefSeq:AT1G18990 | TAIR:AT1G18990 | RefSeq:AT1G18990-TAIR-G | EnsemblPlants:AT1G18990.1 | TAIR:AT1G18990.1 | Unigene:At.41768 |
| EMBL:BT002932 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0017022 | InterPro:GTD-bd | InterPro:IPR007656 | RefSeq:NP_173333.1 |
| PFAM:PF04576 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001185 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51775 | PANTHER:PTHR31448 | PANTHER:PTHR31448:SF9 |
| UniProt:Q9LMC8 | TMHMM:TMhelix | UniParc:UPI000000BE46 | SEG:seg | : | : |
Description
MYOB5Probable myosin-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMC8]
Coordinates
chr1:-:6558574..6560561
Molecular Weight (calculated)
59881.0 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.488
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRSFKNFI EEELGTFPQF LIYALLEWIL IIILFIDGFL AFFSNQIAKF FDLKIPCLLC TRLDHVLVSR NPDFYYNDSI CDAHKKNVSS LAYCHVHKKL
101: SEIKRMCEGC LLSFATEKET DVDTYKSLIG ILHKDLELLI DDERELQLAF PVAGSKKDEN FYQVENRTNN SNDRFQRQQR CSCCGQIMKL KSDKPKSNNQ
201: SFFGAPSPSP RVSFNQRTLD LSNIKYTDLP EDDDALNTKG ASLDAVDDRT PSFVKGGNKF FGIPLSDSAQ NSPRWSVRSM KKSFVDQNGL ESEVLDGDSI
301: LQHLNRQVRL DRKSLMDLYM ELDEERSASA VAANNAMAMI TRLQAEKAAV QMEALQYQRM MDEQAEYDQE ALQSMNGLLV KREEEMKELE AGIEVYRLRY
401: GLLREERGEA EEFLDEETKP VSDLPVCSSN HEEDLEQMKD SAEDSIGNNG VMIIEEEKEN GSRKDMLVKE ISEITERLNA IESKGELLQQ ISDVLDVSEG
501: EAILLQISQN LHMLRSFIEM PTES
101: SEIKRMCEGC LLSFATEKET DVDTYKSLIG ILHKDLELLI DDERELQLAF PVAGSKKDEN FYQVENRTNN SNDRFQRQQR CSCCGQIMKL KSDKPKSNNQ
201: SFFGAPSPSP RVSFNQRTLD LSNIKYTDLP EDDDALNTKG ASLDAVDDRT PSFVKGGNKF FGIPLSDSAQ NSPRWSVRSM KKSFVDQNGL ESEVLDGDSI
301: LQHLNRQVRL DRKSLMDLYM ELDEERSASA VAANNAMAMI TRLQAEKAAV QMEALQYQRM MDEQAEYDQE ALQSMNGLLV KREEEMKELE AGIEVYRLRY
401: GLLREERGEA EEFLDEETKP VSDLPVCSSN HEEDLEQMKD SAEDSIGNNG VMIIEEEKEN GSRKDMLVKE ISEITERLNA IESKGELLQQ ISDVLDVSEG
501: EAILLQISQN LHMLRSFIEM PTES
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.