Factsheet for AT1G04890.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	75.91	59.77
CDX89779	Canola	endoplasmic reticulum, extracellular	75.67	59.69
CDY18267	Canola	endoplasmic reticulum, plasma membrane	75.18	59.31
GSMUA_Achr6P06580_001	Banana	nucleus	18.98	26.09
PGSC0003DMT400011603	Potato	nucleus	31.87	25.69
AT4G13630.1	Thale cress	extracellular, golgi	33.58	24.25
AT4G13160.1	Thale cress	endoplasmic reticulum	15.57	22.7
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	36.74	20.27
GSMUA_Achr3P17210_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	28.47	19.15
AT2G24140.2	Thale cress	nucleus	13.38	16.98
AT3G54740.3	Thale cress	cytosol, nucleus, peroxisome	16.55	15.53
TraesCS2B01G291300.1	Wheat	plastid	17.52	14.85
TraesCS2A01G273300.1	Wheat	plastid	17.27	14.64
TraesCS2D01G272500.1	Wheat	plastid	17.27	14.64
Zm00001d014088_P001	Maize	plastid	17.27	14.34
AT5G06560.1	Thale cress	nucleus	17.52	13.9
HORVU2Hr1G066690.6	Barley	cytosol, mitochondrion	14.84	13.77
Zm00001d032786_P001	Maize	plastid	13.63	13.63
OQU91677	Sorghum	endoplasmic reticulum, golgi	15.82	13.54
AT4G30830.1	Thale cress	nucleus	11.92	13.5
AT3G11850.2	Thale cress	nucleus	15.33	12.5
AT5G57830.1	Thale cress	nucleus	11.68	12.4
AT1G18990.1	Thale cress	endoplasmic reticulum, plasma membrane	14.11	11.07
AT1G74830.1	Thale cress	extracellular, golgi, vacuole	13.38	10.15
AT1G70750.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion	18.49	10.15
AT5G16720.1	Thale cress	endoplasmic reticulum, golgi, vacuole	14.6	8.89
AT2G30690.2	Thale cress	endoplasmic reticulum, plasma membrane, plastid	13.63	7.37
AT1G08800.1	Thale cress	extracellular, vacuole	13.87	5.12

Protein Annotations

MapMan:35.2	EntrezGene:839387	ProteinID:AEE27756.1	ArrayExpress:AT1G04890	EnsemblPlantsGene:AT1G04890	RefSeq:AT1G04890
TAIR:AT1G04890	RefSeq:AT1G04890-TAIR-G	EnsemblPlants:AT1G04890.1	TAIR:AT1G04890.1	Unigene:At.51483	ncoils:Coil
UniProt:F4I759	GO:GO:0003674	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:GTD-bd
InterPro:IF_conserved	InterPro:IPR007656	RefSeq:NP_171981.2	PFAM:PF04576	ScanProsite:PS00226	PFscan:PS51775
PANTHER:PTHR31422	PANTHER:PTHR31422:SF3	UniParc:UPI0001505784	SEG:seg	:	:

Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT1G04890]

Coordinates

chr1:-:1380382..1382599

Molecular Weight (calculated)

47365.8 Da

IEP (calculated)

7.076

GRAVY (calculated)

-0.975

Length

411 amino acids

Sequence
(BLAST)

001: MTVQGMKGKR FVTRRSRNGL KNHRRSGRVN CASLRSISSS EAFDETAKTN LMQPYDETCS NDDQKDCGKA GEGTNLSHWP EFEKTVSVNQ QVNSNSSAEQ
101: SFVRNVEKRS VRDLEELLKE ERAARATVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEARQFQRL VEERSTFDAE EMVILKDILI RREREKHFLE
201: KEVEAYRQLL EETEELECSL IKEKNVPEPE HKQNKDCQER RALLVQELDG TVLDMPYREE GNRDKNRDLY KSDSEVAYSR VRDVYMVKDE TENISKKKNL
301: EESSVGKPKE SLDENSIIVS GIARKLPPLC RPRKKSLSSS GSRRKSMSAV DYERLKIENE VELLRERLKA VQEEREELTR RASLPPLPSK VRATSEKRSW
401: TRSCSMDLHS S

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.