Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G272500.1 | Wheat | plastid | 96.08 | 96.08 |
| TraesCS2B01G291300.1 | Wheat | plastid | 95.88 | 95.88 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 63.51 | 69.53 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 57.32 | 57.92 |
| Zm00001d014088_P001 | Maize | plastid | 58.35 | 57.17 |
| Zm00001d032786_P001 | Maize | plastid | 43.51 | 51.34 |
| Bra034886.1-P | Field mustard | cytosol | 10.31 | 39.06 |
| CDY01114 | Canola | extracellular, plasma membrane | 17.32 | 32.18 |
| Bra032692.1-P | Field mustard | extracellular, plasma membrane | 17.32 | 32.18 |
| CDY47332 | Canola | extracellular, plasma membrane | 17.32 | 32.18 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 17.11 | 29.43 |
| TraesCS4A01G159000.1 | Wheat | cytosol | 19.79 | 21.87 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 12.78 | 20.74 |
| Bra032725.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 22.89 | 20.11 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 22.89 | 20.07 |
| CDY68842 | Canola | vacuole | 23.3 | 20.07 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 23.3 | 19.86 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 24.33 | 19.31 |
| PGSC0003DMT400011603 | Potato | nucleus | 18.76 | 17.84 |
| Bra015360.1-P | Field mustard | endoplasmic reticulum, extracellular | 18.97 | 17.62 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 18.76 | 17.47 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 18.76 | 17.47 |
| Solyc12g098380.1.1 | Tomato | extracellular, plasma membrane, vacuole | 26.8 | 17.45 |
| AT1G04890.1 | Thale cress | mitochondrion | 14.64 | 17.27 |
| TraesCS1A01G147200.1 | Wheat | plastid | 16.91 | 17.12 |
| VIT_05s0029g00110.t01 | Wine grape | endoplasmic reticulum, golgi | 27.63 | 16.81 |
| KRH07498 | Soybean | endoplasmic reticulum, plasma membrane | 22.06 | 16.41 |
| KRH66087 | Soybean | endoplasmic reticulum, plasma membrane | 21.24 | 15.9 |
| TraesCS5A01G400200.1 | Wheat | nucleus | 11.96 | 15.3 |
| TraesCS5A01G370700.1 | Wheat | nucleus | 7.63 | 11.11 |
| TraesCS7A01G285400.1 | Wheat | nucleus | 9.69 | 10.61 |
| TraesCS5A01G444100.1 | Wheat | plastid | 13.81 | 10.17 |
| TraesCS4A01G086600.5 | Wheat | mitochondrion | 16.7 | 9.36 |
| TraesCS4A01G023700.1 | Wheat | golgi, vacuole | 14.43 | 8.65 |
| TraesCS3A01G321400.1 | Wheat | golgi | 15.05 | 8.35 |
| TraesCS4A01G270100.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 14.02 | 7.59 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G273300.1 | EnsemblPlantsGene:TraesCS2A01G273300 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF3 | PFAM:PF04576 | PFscan:PS51775 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr2A:-:447908450..447910477
Molecular Weight (calculated)
53454.9 Da
IEP (calculated)
4.499
GRAVY (calculated)
-0.396
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPCPGVAGV HARWTARALA GAFLDLAIVY AFLCAAAAAS AASALLALFR LRLPCTCSRP HLPCLFAFLF RYPSRVLESL LLSLRSRFPF VFNSDDDSQD
101: EGEGKAESVD EEEEEVNLKR EVDEGNDVSA LQQELDKERS AAASAAEEAM AMILRLQKEK SSLEMEVRQQ RRTSDERCAF YENEVEELKD ILLMRERETR
201: SLQKEVESYR RMLGLTGDND DEEVEMMTPH SYFLEGEPSS SRSLDKNAGV QPGNNSVFSF QKHFARQQVS PIRVGRVKDG NEDSLPFQAL GEVPVAGSKL
301: GADRCEDDGT ETVVILPLSA RSLCLPQSAR CLDQGGDVEV NAAAGMKGME ELTADEFQEE DSGRLDKTCH DFMASDNDAN IFDVHVVDDI CFSTEVKGLI
401: GRSFSDATMQ ADKLQNRAAA DDLLGKSLNA IEGAQNKMRL AASGRRQSLQ LQLLEDIADQ LQEIKDVADA GRHLHCISPK ISKKS
101: EGEGKAESVD EEEEEVNLKR EVDEGNDVSA LQQELDKERS AAASAAEEAM AMILRLQKEK SSLEMEVRQQ RRTSDERCAF YENEVEELKD ILLMRERETR
201: SLQKEVESYR RMLGLTGDND DEEVEMMTPH SYFLEGEPSS SRSLDKNAGV QPGNNSVFSF QKHFARQQVS PIRVGRVKDG NEDSLPFQAL GEVPVAGSKL
301: GADRCEDDGT ETVVILPLSA RSLCLPQSAR CLDQGGDVEV NAAAGMKGME ELTADEFQEE DSGRLDKTCH DFMASDNDAN IFDVHVVDDI CFSTEVKGLI
401: GRSFSDATMQ ADKLQNRAAA DDLLGKSLNA IEGAQNKMRL AASGRRQSLQ LQLLEDIADQ LQEIKDVADA GRHLHCISPK ISKKS
001: MDYQESYRLT FYGILVAFME LAFAYCLLCV SAFVFITSKL LLFMPCIGYQ NSDLCIQKLL FDWPFRIILR VQKLATTNRP SVLHHQEQEQ EQEQEQEEKT
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
Arabidopsis Description
At4g13160 [Source:UniProtKB/TrEMBL;Acc:Q9SVR1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.