Factsheet for GSMUA_Achr3P17210_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 4
extracellular 3
endoplasmic reticulum 4
vacuole 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034886.1-P	Field mustard	cytosol	9.82	46.88
GSMUA_Achr6P06580_001	Banana	nucleus	22.75	46.49
CDY47332	Canola	extracellular, plasma membrane	15.38	36.02
Bra032692.1-P	Field mustard	extracellular, plasma membrane	15.22	35.63
CDY01114	Canola	extracellular, plasma membrane	15.22	35.63
AT4G13160.1	Thale cress	endoplasmic reticulum	15.22	32.98
PGSC0003DMT400011603	Potato	nucleus	24.71	29.61
VIT_05s0029g00110.t01	Wine grape	endoplasmic reticulum, golgi	38.46	29.49
AT1G04890.1	Thale cress	mitochondrion	19.15	28.47
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	25.37	28.08
CDY01147	Canola	extracellular, golgi, vacuole	25.04	27.67
CDX89779	Canola	endoplasmic reticulum, extracellular	23.57	27.64
CDY18267	Canola	endoplasmic reticulum, plasma membrane	23.57	27.64
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	23.57	27.59
AT4G13630.1	Thale cress	extracellular, golgi	25.53	27.42
CDY68842	Canola	vacuole	25.2	27.35
KRH07498	Soybean	endoplasmic reticulum, plasma membrane	28.97	27.15
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	32.24	26.44
KRH66087	Soybean	endoplasmic reticulum, plasma membrane	26.84	25.31
TraesCS2D01G272500.1	Wheat	plastid	19.48	24.54
TraesCS2B01G291300.1	Wheat	plastid	19.48	24.54
TraesCS2A01G273300.1	Wheat	plastid	19.31	24.33
Zm00001d014088_P001	Maize	plastid	19.31	23.84
OQU91677	Sorghum	endoplasmic reticulum, golgi	18.49	23.54
Zm00001d032786_P001	Maize	plastid	14.73	21.9
GSMUA_Achr3P15020_001	Banana	nucleus	13.26	17.96
GSMUA_Achr8P04680_001	Banana	cytosol, mitochondrion	10.8	17.6
HORVU2Hr1G066690.6	Barley	cytosol, mitochondrion	12.6	17.38
GSMUA_Achr8P26680_001	Banana	cytosol	8.18	16.5
GSMUA_Achr2P12800_001	Banana	cytosol, nucleus, plasma membrane	11.29	15.33
GSMUA_Achr1P14210_001	Banana	cytosol	8.67	14.85
GSMUA_Achr10P...	Banana	nucleus	11.13	14.11
GSMUA_Achr1P05380_001	Banana	golgi, plasma membrane	13.42	13.97
GSMUA_Achr4P22730_001	Banana	nucleus, plastid	10.47	13.42
GSMUA_AchrUn_...	Banana	golgi, vacuole	13.26	12.7
GSMUA_Achr4P17820_001	Banana	golgi	14.4	11.94
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	14.89	11.5
GSMUA_Achr6P17030_001	Banana	endoplasmic reticulum, golgi	15.88	10.61
GSMUA_Achr7P01610_001	Banana	golgi, mitochondrion	13.42	10.3
GSMUA_Achr6P07650_001	Banana	golgi, plasma membrane	15.22	9.89

Protein Annotations

EnsemblPlants:GSMUA_Achr3P17210_001	EnsemblPlants:GSMUA_Achr3T17210_001	EnsemblPlantsGene:GSMUA_Achr3G17210_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422	PANTHER:PTHR31422:SF3	PFAM:PF04576
PFscan:PS51775	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002957E71	UniProt:M0SFD7	MapMan:35.2

Description

Putative uncharacterized protein AT4g13630 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17210_001]

Coordinates

chr3:+:18486944..18489316

Molecular Weight (calculated)

69194.7 Da

IEP (calculated)

6.089

GRAVY (calculated)

-0.685

Length

611 amino acids

Sequence
(BLAST)

001: MASAPACGAI RSWTLPSLVG AYLDLALAYL FLCGALLTYL ASKFLALFGL SLPCSCRDDY LVRKIDGVHV AVRGRFPFDF ACRHCRRRCC CYDDDDAVKD
101: CGFGAATRGV PDMRRGGGQQ EESCGSVWKP SASNRLKLPD GAESGNYFGR DQMDVVNGID ILHAETPPAV HRRQRRRKRN HISSTKTKFT EDTSCGLKQV
201: CGSKGNESIV IRDLKEVLDR ERSALAALYL DLEKERSASA TAADEAMAMI SRLQEEKASI EMEARQFQRM VVEKSVYDEE EMEILKEIIL QQEREKHVLE
301: KEVEAYQAMM FNDGDVQQPL ENYQIDVAQL MGENLCPSFG SSYNPELMLE EIHKSIEKKE KLKDKMKFLD DRGHLDAKKQ NSISHFDRMP MSVSVAENAV
401: QKHNMEKVHP KTPDIGDECN VQDKSMTDAS VLDVHVINDK TDLDGNENVE QMDFSQKGCT SSTYYEYNTT NEPSMTDVLD DPSTPDSDTR WTYVELNIHR
501: SHSDNTKTGH SMDSSRQRAS WFHPRRSSTS AVDNERFKIE NEVEVLRKRL KLIQQGRKKL NLSVEQREKE ANNLQLLDEI SSQLQEIRKE ARPGTSTRQS
601: SLPPSSSKVC H

Best Arabidopsis Sequence Match ( AT4G13630.2 )
(BLAST)

001: MRCQEVKSWT FKGLVAAFID LSVAFSLLCA SFIVYVTSKF LGLFGLDLPC PCDGLYSECF QESLRNLPVK KISSVQRSVK NRTPFDSILY NGGKKRKCER
101: RRVQLEDEVS STTPSVGKFE NKASGFDLLT AQSLKKGSFK VKSKRLSFHR SPYGFKNHYQ SCLGLKSFEG SYDENDPLLV NSNDSGKALE DVSLRKSVSL
201: SSVGCGVGEG ACSSPGMVQR TVEMSEQVLG EERAARASLA LELEKERNAA ASAADEALGM ILRLQEEKAS IEMEARQYQR MIEEKSAFDA EEMSILKEIL
301: LRREREKHFL EKEVDTYRQM FLETEQPHNT PDSKPAQIER LQTPQQITEP WDDMETVNVS SGFEIFTNQM DNTECDQSRS EPFDALSDIE LKEREEGETL
401: YAELVSRTSD IAVSKKLCED PHDIDCHVHD IHVVTDEDNK GQLNVPSDHA TQDLKLDRSQ SVSDTSYAFP QGKSNMSTNM RRNSMSAIDY ERLKIESEVG
501: LLRGRLRAVQ KGREKISFSS KDQSKSQVQR CGDKTSRFWE ARRSGHLDSS SPSSTMVKAM SMPLDLHSA

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT4G13630]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.