Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G272500.1 | Wheat | plastid | 97.11 | 97.11 |
| TraesCS2A01G273300.1 | Wheat | plastid | 95.88 | 95.88 |
| HORVU2Hr1G066690.6 | Barley | cytosol, mitochondrion | 63.92 | 69.98 |
| OQU91677 | Sorghum | endoplasmic reticulum, golgi | 58.35 | 58.96 |
| Zm00001d014088_P001 | Maize | plastid | 59.18 | 57.98 |
| Zm00001d032786_P001 | Maize | plastid | 43.92 | 51.82 |
| Bra034886.1-P | Field mustard | cytosol | 10.1 | 38.28 |
| CDY01114 | Canola | extracellular, plasma membrane | 17.11 | 31.8 |
| CDY47332 | Canola | extracellular, plasma membrane | 17.11 | 31.8 |
| Bra032692.1-P | Field mustard | extracellular, plasma membrane | 17.11 | 31.8 |
| AT4G13160.1 | Thale cress | endoplasmic reticulum | 16.91 | 29.08 |
| GSMUA_Achr6P06580_001 | Banana | nucleus | 12.58 | 20.4 |
| Bra032725.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 23.09 | 20.29 |
| CDY01147 | Canola | extracellular, golgi, vacuole | 23.09 | 20.25 |
| CDY68842 | Canola | vacuole | 23.51 | 20.25 |
| AT4G13630.1 | Thale cress | extracellular, golgi | 23.51 | 20.04 |
| GSMUA_Achr3P17210_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 24.54 | 19.48 |
| PGSC0003DMT400011603 | Potato | nucleus | 18.76 | 17.84 |
| Bra015360.1-P | Field mustard | endoplasmic reticulum, extracellular | 18.97 | 17.62 |
| Solyc12g098380.1.1 | Tomato | extracellular, plasma membrane, vacuole | 27.01 | 17.58 |
| AT1G04890.1 | Thale cress | mitochondrion | 14.85 | 17.52 |
| CDX89779 | Canola | endoplasmic reticulum, extracellular | 18.76 | 17.47 |
| CDY18267 | Canola | endoplasmic reticulum, plasma membrane | 18.76 | 17.47 |
| VIT_05s0029g00110.t01 | Wine grape | endoplasmic reticulum, golgi | 27.84 | 16.94 |
| TraesCS1B01G165300.1 | Wheat | plastid | 16.49 | 16.7 |
| KRH07498 | Soybean | endoplasmic reticulum, plasma membrane | 22.06 | 16.41 |
| KRH66087 | Soybean | endoplasmic reticulum, plasma membrane | 21.44 | 16.05 |
| TraesCS5B01G405000.1 | Wheat | nucleus | 11.75 | 15.12 |
| TraesCS5B01G373100.1 | Wheat | nucleus | 15.26 | 14.8 |
| TraesCS7B01G199800.1 | Wheat | nucleus | 9.9 | 10.84 |
| TraesCS1B01G153100.1 | Wheat | cytosol, golgi, mitochondrion, plastid | 13.4 | 10.43 |
| TraesCS5B01G448800.1 | Wheat | mitochondrion | 13.81 | 10.28 |
| TraesCS4B01G217800.2 | Wheat | mitochondrion | 15.46 | 8.88 |
| TraesCS4B01G279900.1 | Wheat | golgi, vacuole | 13.2 | 8.04 |
| TraesCS3B01G343400.3 | Wheat | golgi, mitochondrion | 13.61 | 7.51 |
| TraesCS4B01G044000.1 | Wheat | plastid | 13.61 | 7.33 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G291300.1 | EnsemblPlantsGene:TraesCS2B01G291300 | InterPro:GTD-bd | InterPro:IPR007656 | ncoils:Coil | PANTHER:PTHR31422 |
| PANTHER:PTHR31422:SF3 | PFAM:PF04576 | PFscan:PS51775 | SEG:seg | TMHMM:TMhelix | MapMan:35.2 |
Description
No Description!
Coordinates
chr2B:-:404744838..404747113
Molecular Weight (calculated)
53644.9 Da
IEP (calculated)
4.416
GRAVY (calculated)
-0.433
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPCPGGAGV HARWTARALA GAFLDLAIVY AFLCAAAAAS AASALLALFR LRLPCTCSRP HLPCLFAFLF RYPSRVLESL LLSLRSRFPF VFNSDDDRQD
101: EGEDEDESVD EEEEDVNLKR EVDEGNDVSV LQQELDKERS AAASAAEEAM AMILRLQKEK SSLEMEVRQQ RRTSDERCAF YEDEVEELKD ILLMRERETR
201: SLQKEVESYR RMLGLTGDDD DEEVEMMTPH SYFLEGEPSS SRSVDKNAGV QPGNNSVFSF QKQFVRQQVS PIRVGRVKDG NEDSLPFQAP GEVPVAGSKL
301: GADRCEDDGT ETVVILPLSA RSLCLPQSAR CLDQGGDVEV NAAAGMKGME ELTADEFQEV DSGRLDRTCH DFMASDNDAN IFDVHVVDDI CFSTEVKGLI
401: GRSFSDATMQ ADKLQNRAAT DDLLGKSLNA IKGAQNKIRL AASERRQSLQ LQLLEDIADQ LQEIKDVADA GRHSHCISPK ISKKS
101: EGEDEDESVD EEEEDVNLKR EVDEGNDVSV LQQELDKERS AAASAAEEAM AMILRLQKEK SSLEMEVRQQ RRTSDERCAF YEDEVEELKD ILLMRERETR
201: SLQKEVESYR RMLGLTGDDD DEEVEMMTPH SYFLEGEPSS SRSVDKNAGV QPGNNSVFSF QKQFVRQQVS PIRVGRVKDG NEDSLPFQAP GEVPVAGSKL
301: GADRCEDDGT ETVVILPLSA RSLCLPQSAR CLDQGGDVEV NAAAGMKGME ELTADEFQEV DSGRLDRTCH DFMASDNDAN IFDVHVVDDI CFSTEVKGLI
401: GRSFSDATMQ ADKLQNRAAT DDLLGKSLNA IKGAQNKIRL AASERRQSLQ LQLLEDIADQ LQEIKDVADA GRHSHCISPK ISKKS
001: MDYQESYRLT FYGILVAFME LAFAYCLLCV SAFVFITSKL LLFMPCIGYQ NSDLCIQKLL FDWPFRIILR VQKLATTNRP SVLHHQEQEQ EQEQEQEEKT
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
101: MVDKDKNSEL MDRVRLLEVA VEQEKVAKAA LMVELEQERA ASASAADEAM AMILRLQADK ASLEMEGKQY ERMIDEKFAY DEEEMNILKE ILFKREREKH
201: FLEKELETYK HIDDDQETED NEKRECDEDG EPIVYDVHVI EDNSQTKVRD DDVAEHKEMK EEEIVKDHDS VSSPTSSSTH LP
Arabidopsis Description
At4g13160 [Source:UniProtKB/TrEMBL;Acc:Q9SVR1]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.