Factsheet for Bra015360.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 3
plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89779	Canola	endoplasmic reticulum, extracellular	98.66	98.85
CDY18267	Canola	endoplasmic reticulum, plasma membrane	93.3	93.47
AT1G04890.1	Thale cress	mitochondrion	59.77	75.91
Bra034886.1-P	Field mustard	cytosol	12.26	50.0
Bra032692.1-P	Field mustard	extracellular, plasma membrane	18.39	36.78
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	33.14	31.34
GSMUA_Achr6P06580_001	Banana	nucleus	15.33	26.76
Solyc12g098380.1.1	Tomato	extracellular, plasma membrane, vacuole	36.4	25.5
PGSC0003DMT400011603	Potato	nucleus	24.33	24.9
GSMUA_Achr3P17210_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	27.59	23.57
Zm00001d032786_P001	Maize	plastid	15.33	19.46
Zm00001d014088_P001	Maize	plastid	18.2	19.19
TraesCS2B01G291300.1	Wheat	plastid	17.62	18.97
TraesCS2A01G273300.1	Wheat	plastid	17.62	18.97
TraesCS2D01G272500.1	Wheat	plastid	17.62	18.97
OQU91677	Sorghum	endoplasmic reticulum, golgi	17.43	18.96
Bra007093.1-P	Field mustard	nucleus	13.98	17.98
Bra028728.1-P	Field mustard	nucleus	13.41	17.2
Bra009206.1-P	Field mustard	nucleus	13.79	16.86
Bra014792.1-P	Field mustard	cytosol	12.45	16.33
Bra034805.1-P	Field mustard	nucleus	13.41	15.66
Bra006798.1-P	Field mustard	nucleus	9.0	15.36
Bra039233.1-P	Field mustard	nucleus	9.58	15.34
Bra006800.1-P	Field mustard	cytosol	4.6	14.81
Bra011226.1-P	Field mustard	cytosol	9.2	14.59
Bra003783.1-P	Field mustard	extracellular, plasma membrane	13.03	14.35
Bra038684.1-P	Field mustard	nucleus	10.73	13.9
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	13.6	13.89
HORVU2Hr1G066690.6	Barley	cytosol, mitochondrion	11.49	13.54
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	13.22	13.32
Bra002693.1-P	Field mustard	nucleus	9.39	13.32
Bra020409.1-P	Field mustard	nucleus	8.05	13.21
Bra002694.1-P	Field mustard	nucleus	9.2	13.04
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	13.41	12.89
Bra016190.1-P	Field mustard	mitochondrion	16.86	10.1
Bra008601.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	13.03	9.86
Bra021657.1-P	Field mustard	endoplasmic reticulum	13.6	9.57
Bra018297.1-P	Field mustard	endoplasmic reticulum, extracellular	12.26	9.34
Bra018599.1-P	Field mustard	extracellular, vacuole	13.6	7.41
Bra030742.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid, vacuole	14.18	6.42

Protein Annotations

EnsemblPlants:Bra015360.1	EnsemblPlants:Bra015360.1-P	EnsemblPlantsGene:Bra015360	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil	PANTHER:PTHR31422	PANTHER:PTHR31422:SF3	PFAM:PF04576
PFscan:PS51775	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002543CB5	UniProt:M4DFT7	MapMan:35.2

Description

AT1G04890 (E=3e-089) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Intermediate filament protein, conserved site (InterPro:IPR018039), Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13630.1); Has 6609 Blast hits to 4661 proteins in 382 species: Archae - 48; Bacteria - 283; Metazoa - 4004; Fungi - 343; Plants - 346; Viruses - 6; Other Eukaryotes - 1579 (source: NCBI BLink).

Coordinates

chrA10:+:2278418..2280292

Molecular Weight (calculated)

59661.1 Da

IEP (calculated)

7.949

GRAVY (calculated)

-0.669

Length

522 amino acids

Sequence
(BLAST)

001: MPCLDTQDWS LTGLIGAFLN LTIAYLLLCT SLFIHVVLRS LGLLGFSLPR FHNGRFGDPN MCIERDLLAC ASEKISSVDR LIKSKIPFGS ITSDDDSKRF
101: VEMKLVRKNS GDVSNARVKD ETEEDASRDE QNVMNLMTVQ GVKGKRFVTR RPRKGLKNPR RCRVDYGSLG SVSSSEAFDE TVKHPLMQPY NNVFIRANDD
201: RKDDVKTEER TSPSHWPELE KTVSLNSSAS LCFVRNVEEN SVKELEEALK KERAARAAVC VELDKERSAA ASAADEAMAM IHRLQDEKAA IEMEAMQFQR
301: MVEEKSTFDA EEMVILKDIL IRREREKHFL EKEVEAYRDL LVEAEESECS LPKENQNKEP PQERRALLVQ EHDGTVLDMP YREDKNRYLY TSDSEVAYSR
401: VRDVYMVKEE KENVGKKKNL EESSANNGFI VSGIARKLPP LCRPRKQSLS SSGSRRKSMS AVDYERLKIE NEVELLRERL KAVQEERKEL TRRASLPPLS
501: SKVRVASKNR GWRRSSVDLH SS

Best Arabidopsis Sequence Match ( AT1G04890.1 )
(BLAST)

001: MTVQGMKGKR FVTRRSRNGL KNHRRSGRVN CASLRSISSS EAFDETAKTN LMQPYDETCS NDDQKDCGKA GEGTNLSHWP EFEKTVSVNQ QVNSNSSAEQ
101: SFVRNVEKRS VRDLEELLKE ERAARATVCV ELDKERSAAA SAADEAMAMI HRLQDEKAAI EMEARQFQRL VEERSTFDAE EMVILKDILI RREREKHFLE
201: KEVEAYRQLL EETEELECSL IKEKNVPEPE HKQNKDCQER RALLVQELDG TVLDMPYREE GNRDKNRDLY KSDSEVAYSR VRDVYMVKDE TENISKKKNL
301: EESSVGKPKE SLDENSIIVS GIARKLPPLC RPRKKSLSSS GSRRKSMSAV DYERLKIENE VELLRERLKA VQEEREELTR RASLPPLPSK VRATSEKRSW
401: TRSCSMDLHS S

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT1G04890]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.