Factsheet for Bra007093.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78259	Canola	nucleus	99.26	99.26
CDX73453	Canola	nucleus	96.8	94.93
AT3G54740.3	Thale cress	cytosol, nucleus, peroxisome	80.79	74.89
Bra014792.1-P	Field mustard	cytosol	70.44	71.86
Bra028728.1-P	Field mustard	nucleus	42.61	42.51
Bra009206.1-P	Field mustard	nucleus	41.13	39.11
Bra034805.1-P	Field mustard	nucleus	41.38	37.58
Bra038684.1-P	Field mustard	nucleus	32.02	32.26
Bra034886.1-P	Field mustard	cytosol	9.85	31.25
Bra006798.1-P	Field mustard	nucleus	14.78	19.61
Bra032692.1-P	Field mustard	extracellular, plasma membrane	12.32	19.16
Bra039233.1-P	Field mustard	nucleus	15.27	19.02
Bra002693.1-P	Field mustard	nucleus	16.01	17.66
Bra002694.1-P	Field mustard	nucleus	15.76	17.39
Bra020409.1-P	Field mustard	nucleus	13.55	17.3
Bra006800.1-P	Field mustard	cytosol	6.9	17.28
Bra011226.1-P	Field mustard	cytosol	13.05	16.11
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	17.98	13.98
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	17.73	13.04
Bra003783.1-P	Field mustard	extracellular, plasma membrane	14.78	12.66
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	15.52	12.33
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	15.52	12.16
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	15.52	11.6
Bra008601.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	16.5	9.71
Bra016190.1-P	Field mustard	mitochondrion	18.97	8.84
Bra018297.1-P	Field mustard	endoplasmic reticulum, extracellular	12.81	7.59
Bra021657.1-P	Field mustard	endoplasmic reticulum	12.07	6.6
Bra018599.1-P	Field mustard	extracellular, vacuole	15.52	6.58
Bra030742.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid, vacuole	15.27	5.38

Protein Annotations

EnsemblPlants:Bra007093.1	EnsemblPlants:Bra007093.1-P	EnsemblPlantsGene:Bra007093	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF0	PFAM:PF04576	PFscan:PS51775	SEG:seg	UniParc:UPI0002542932
UniProt:M4CSA1	MapMan:35.1	:	:	:	:

Description

AT3G54740 (E=6e-091) | unknown protein

Coordinates

chrA09:+:27263352..27264732

Molecular Weight (calculated)

46217.0 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.586

Length

406 amino acids

Sequence
(BLAST)

001: MDSELKFSSR DVVKRCDYSL EASSSSSEPL TRTVKRKLND FLLRGSSSDS SSNAKSLVEN ECAALLEDLS SQRKTVKDLH LELEEERKAA ASAANETMSM
101: ILRLQREKAE IQMEARQFKA FAEEKMTHDQ EKLLVLEELL YEKEQAIEAL TYEVEAYKDK LLSYGLTEGE IHDEILGFGK DSVDVYPCEY SVDDQSPRWP
201: YYDPNSPLGT AKEIKGTEFC ADSPMSSSGD RVYTIDSIHV GVSEVKIVDE PSRLSKGKLN GDHWDSPRKE EPVMMMMAQQ GGNEPGIEKL YTRLQALEAD
301: RESLRQIIVS MRTDKAQLVL LKEYAQRLSK ETVTTDRRNM VRKMPFFKGV SVVTAFKWMV SFVSCRRKAK RNKYVYDMSA NNMGMLMILG EGSRSRRWSC
401: LTSSHV

Best Arabidopsis Sequence Match ( AT3G54740.5 )
(BLAST)

001: MDSELSFSSR DVVNCCEYGC DYSLGACSSD PLARTVKRKF NEFKEGNNMM LLRGSSDSSS SNAKILVENE CAALLEALSS QRETVKDLHL ELEEERNAAA
101: SAANETMSMI LRLQREKAEI QMEARQFKMF AQEKMTHDQE KLSVLENLLY EKEQAIEALT YEVEAYKHRL LSYGVSEAEI HDQILGFGRD SSTVGFDVYP
201: CEYTSLECSV DENPSGPDGN FEIEEKVMVG QSPRWPYYDP NSPLGTAKDI KGASFADSPM SSSSDRVYTI DSIHVGVSEV KIDDEPNKMS KGKLNGDHWN
301: SPRYQEPFTT QQGVNEPDIE KLYTRLQALE ADRESLRQII VSMRTDKAQL VLLKEIAQHL TKETGATSRR NPVSKMPSLK VFSVVTVFKW IVSFVSWKRK
401: ARQNKYVYEL SANNMGMLMI LGEGSGTRRW RCLTSSHV

Arabidopsis Description

Uncharacterized protein T5N23_100 [Source:UniProtKB/TrEMBL;Acc:Q9M1S6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.