Factsheet for Bra020409.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32744	Canola	nucleus	98.74	85.79
CDY02772	Canola	nucleus	93.08	80.87
Bra006800.1-P	Field mustard	cytosol	38.05	74.69
Bra006798.1-P	Field mustard	nucleus	68.24	70.92
Bra002693.1-P	Field mustard	nucleus	78.3	67.66
AT5G57830.1	Thale cress	nucleus	81.45	66.93
Bra002694.1-P	Field mustard	nucleus	76.42	66.03
VIT_11s0037g00610.t01	Wine grape	nucleus	44.97	30.49
Bra034886.1-P	Field mustard	cytosol	11.32	28.12
PGSC0003DMT400023950	Potato	nucleus	38.36	27.42
PGSC0003DMT400028965	Potato	nucleus	38.99	27.37
Solyc07g005910.2.1	Tomato	nucleus	38.68	27.15
Bra039233.1-P	Field mustard	nucleus	26.1	25.46
KRH72337	Soybean	nucleus	34.59	23.45
Bra011226.1-P	Field mustard	cytosol	24.21	23.4
KRH63109	Soybean	nucleus	33.65	23.21
KRH37764	Soybean	nucleus	32.7	22.71
KRH03013	Soybean	nucleus	33.65	22.57
Solyc11g020850.1.1	Tomato	nucleus	36.48	22.1
KRH12784	Soybean	nucleus	30.82	21.49
TraesCS5B01G405000.1	Wheat	nucleus	22.96	19.36
Os08t0269000-01	Rice	cytosol, golgi, nucleus	17.61	19.31
TraesCS5A01G400200.1	Wheat	nucleus	22.96	19.26
TraesCS5D01G410200.1	Wheat	nucleus	22.33	18.73
Zm00001d024102_P002	Maize	nucleus	19.5	17.51
KRH55008	Soybean	cytosol	8.81	17.39
Bra028728.1-P	Field mustard	nucleus	21.38	16.71
HORVU5Hr1G097200.5	Barley	cytosol	22.01	16.36
TraesCS7D01G282800.1	Wheat	nucleus	21.7	15.83
TraesCS7A01G285400.1	Wheat	nucleus	21.38	15.35
TraesCS7B01G199800.1	Wheat	nucleus	21.38	15.35
Os08t0442350-01	Rice	nucleus	23.9	15.26
OQU80230	Sorghum	cytosol	19.18	15.25
OQU80548	Sorghum	nucleus	25.16	15.15
Bra009206.1-P	Field mustard	nucleus	20.13	14.99
GSMUA_Achr10P...	Banana	nucleus	22.33	14.73
Bra032692.1-P	Field mustard	extracellular, plasma membrane	11.95	14.56
Bra014792.1-P	Field mustard	cytosol	17.92	14.32
Bra038684.1-P	Field mustard	nucleus	17.3	13.65
Bra007093.1-P	Field mustard	nucleus	17.3	13.55
Bra034805.1-P	Field mustard	nucleus	18.87	13.42
Solyc12g009900.1.1	Tomato	cytosol	25.79	12.87
PGSC0003DMT400020469	Potato	cytosol	26.73	12.25
Zm00001d032145_P001	Maize	nucleus	22.01	11.31
Bra032725.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	15.41	8.88
Bra031059.1-P	Field mustard	endoplasmic reticulum, vacuole	13.84	8.61
Bra025705.1-P	Field mustard	endoplasmic reticulum, plasma membrane, plastid	13.52	8.3
Bra015360.1-P	Field mustard	endoplasmic reticulum, extracellular	13.21	8.05
Bra003783.1-P	Field mustard	extracellular, plasma membrane	11.64	7.81
Bra008601.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	16.04	7.39
Bra015891.1-P	Field mustard	endoplasmic reticulum, golgi	12.58	7.37
Bra016190.1-P	Field mustard	mitochondrion	15.41	5.63
Bra018297.1-P	Field mustard	endoplasmic reticulum, extracellular	11.95	5.55
Bra021657.1-P	Field mustard	endoplasmic reticulum	11.95	5.12
Bra018599.1-P	Field mustard	extracellular, vacuole	12.58	4.18
Bra030742.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plastid, vacuole	11.01	3.04

Protein Annotations

EnsemblPlants:Bra020409.1	EnsemblPlants:Bra020409.1-P	EnsemblPlantsGene:Bra020409	InterPro:GTD-bd	InterPro:IPR007656	ncoils:Coil
PANTHER:PTHR31422	PANTHER:PTHR31422:SF1	PFAM:PF04576	PFscan:PS51775	SEG:seg	UniParc:UPI0002545D07
UniProt:M4DV66	MapMan:35.2	:	:	:	:

Description

AT5G57830 (E=4e-067) | unknown protein

Coordinates

chrA02:+:6583372..6584700

Molecular Weight (calculated)

36469.0 Da

IEP (calculated)

4.578

GRAVY (calculated)

-0.711

Length

318 amino acids

Sequence
(BLAST)

001: MVERTLSLGF GETSGVRETM WAQQELLQKI SQELDDEREA SSSAASEALS MILRLQGEKA ALEMETSQYK RMAEEKMCHA ETSLTLFEDL IYNKEMEIAS
101: LEFQSPFDGM SSERRSLLLS DGNGDSSLSL GEDLSAYWEE MRRIDDHVRE ISDTRDSPKE SKWPLLRHKS MSHALVSQVS NTILKSAKSD VSSIMERMKN
201: PDRLSAAKDA LSPNLQDIFK IPRTKESLTI IEEEEEVEER NVRGNMESSN YERELSKPPP SIKEEHMSLL KEIREQLNAM QSEMRSLRSE LHQTQHVSHL
301: EEDPALNSIQ EAMIHFWL

Best Arabidopsis Sequence Match ( AT5G57830.1 )
(BLAST)

001: MVERTMSLGV GGNGETSGVR ETMWAQQELL QKINQELDAE REASSSAASE ALSMILRLQG EKAALEMEAS QYKRMAEEKM CHAETSLVLF EDLIYQKEME
101: IASLEFQVQA YRCKLLSLGC SDPAVIENKF PETLIFSGEN SRGNQKRKMK RNLSSPFDGI SSERSLLLSD VNGESFEEKK GLVESSSVSP REDLNAYWEQ
201: IRRIDEHVRE ISDSRDTQKA SKFPLIRRES ISHALVSQVS NTILESAKSD VSSIMEMMKN PERFSVKDAS LETPILSPKN VQDIFEVPRT KESLTIISEE
301: EEAEERNVRG KMVTSNYDRK VSKPPRDTSI KGEHLSLLKE IREQLNVMQS EMRSLRSELH HQSKPVSNPE EDLVLNSIQE AMIHFWL

Arabidopsis Description

Protein of unknown function, DUF593 [Source:TAIR;Acc:AT5G57830]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.